Tillmann Lüders: Publications

Peer reviewed

2024

Scholz, V., Lüders, T.: Anwendungen der Kabelbakterien in der Umwelt- und Biotechnologie. BIOspektrum, 30(1), 12-15 (2024).
doi:10.1007/s12268-024-2076-2

Leon Ninin, J., Muehe, E., Kölbl, A., Higa Mori, A., Nicol, A., Gilfedder, B., Pausch, J., Urbanski, L., Lüders, T., Planer-Friedrich, B.: Changes in arsenic mobility and speciation across a 2000-year-old paddy soil chronosequence. Science of the Total Environment, 908, 168351 (2024).
doi:10.1016/j.scitotenv.2023.168351

Kanaparthi, D., Lampe, M., Krohn, J., Zhu, B., Hildebrand, F., Boesen, T., Klingl, A., Phapale, P., Lüders, T.: The reproduction process of Gram-positive protocells. Scientific Reports, 14, 7075 (2024).
doi:10.1038/s41598-024-57369-4

Steiner, F., Wild, A., Tyborski, N., Tung, S., Koehler, T., Buegger, F., Carminati, A., Eder, B., Groth, J., Hesse, B., Pausch, J., Lüders, T., Vahl, W., Wolfrum, S., Mueller, C., Vidal, A.: Rhizosheath drought responsiveness is variety‐specific and a key component of belowground plant adaptation. New Phytologist, (2024).
doi:10.1111/nph.19638

Neu, T., Kuhlicke, U., Karwautz, C., Lüders, T.: Unique architecture of microbial snottites from a methane driven biofilm revealed by confocal microscopy. Microscopy Research and Technique, 87(2), 205-213 (2024).
doi:10.1002/jemt.24422

Wild, A., Steiner, F., Kiene, M., Tyborski, N., Tung, S., Köhler, T., Carminati, A., Eder, B., Groth, J., Vahl, W., Wolfrum, S., Lüders, T., Laforsch, C., Mueller, C., Vidal, A., Pausch, J.: Unraveling root and rhizosphere traits in temperate maize landraces and modern cultivars : Implications for soil resource acquisition and drought adaptation. Plant, Cell & Environment, (2024).
doi:10.1111/pce.14898

2023

Köhler, T., Schaum, C., Tung, S., Steiner, F., Tyborski, N., Wild, A., Zebene, A., Pausch, J., Lüders, T., Wolfrum, S., Mueller, C., Vidal, A., Vahl, W., Groth, J., Eder, B., Ahmed, M., Carminati, A.: Above and belowground traits impacting transpiration decline during soil drying in 48 maize (Zea mays) genotypes. Annals of Botany, 131(2), 373-386 (2023).
doi:10.1093/aob/mcac147

Jakobs, A., Gürkal, E., Möller, J., Löder, M., Laforsch, C., Lüders, T.: A novel approach to extract, purify, and fractionate microplastics from environmental matrices by isopycnic ultracentrifugation. Science of the Total Environment, 857, Part 3, 159610 (2023).
doi:10.1016/j.scitotenv.2022.159610

Rauscher, A., Meyer, N., Jakobs, A., Bartnick, R., Lüders, T., Lehndorff, E.: Biodegradable microplastic increases CO₂ emission and alters microbial biomass and bacterial community composition in different soil types. Applied Soil Ecology, 182, 104714 (2023).
doi:10.1016/j.apsoil.2022.104714

Kanaparthi, D., Lampe, M., Krohn, J., Zhu, B., Klingl, A., Lüders, T.: The reproduction of gram-negative protoplasts and the influence of environmental conditions on this process. iScience, 26(11), 108149 (2023).
doi:10.1016/j.isci.2023.108149

2022

Zhu, B., Karwautz, C., Andrei, S., Klingl, A., Pernthaler, J., Lüders, T.: A novel Methylomirabilota methanotroph potentially couples methane oxidation to iodate reduction. mLife, 1(3), 323-328 (2022).
doi:10.1002/mlf2.12033

Wang, Z., Jimenez-Fernandez, O., Osenbrück, K., Schwientek, M., Schloter, M., Fleckenstein, J., Lüders, T.: Streambed microbial communities in the transition zone between groundwater and a first-order stream as impacted by bidirectional water exchange. Water Research, 217, 118334 (2022).
doi:10.1016/j.watres.2022.118334

Sachs, C., Kanaparthi, D., Kublik, S., Szalay, A., Schloter, M., Damgaard, L., Schramm, A., Lüders, T.: Tracing long-distance electron transfer and cable bacteria in freshwater sediments by agar pillar gradient columns. FEMS Microbiology Ecology, 98(5), fiac042 (2022).
doi:10.1093/femsec/fiac042

2021

Fenner, K., Elsner, M., Lüders, T., McLachlan, M., Wackett, L., Zimmermann, M., Drewes, J.: Methodological Advances to Study Contaminant Biotransformation : New Prospects for Understanding and Reducing Environmental Persistence?. ACS ES&T Water, 1(7), 1541-1554 (2021).
doi:10.1021/acsestwater.1c00025

Jakus, N., Blackwell, N., Osenbrück, K., Straub, D., Byrne, J., Wang, Z., Glöckler, D., Elsner, M., Lüders, T., Grathwohl, P., Kleindienst, S., Kappler, A.: Nitrate removal by a novel lithoautotrophic nitrate-reducing iron(II)-oxidizing culture enriched from a pyrite-rich limestone aquifer. Applied and Environmental Microbiology, 87(16) (2021).
doi:10.1128/AEM.00460-21

2020

Zhu, B., Friedrich, S., Wang, Z., Táncsics, A., Lüders, T.: Availability of Nitrite and Nitrate as Electron Acceptors Modulates Anaerobic Toluene-Degrading Communities in Aquifer Sediments. Frontiers in Microbiology, 11, 1867 (2020).
doi:10.3389/fmicb.2020.01867

Táncsics, A., Farkas, M., Horváth, B., Maróti, G., Bradford, L., Lüders, T., Kriszt, B.: Genome analysis provides insights into microaerobic toluene-degradation pathway of Zoogloea oleivorans Bucᵀ. Archives of Microbiology, 202, 421-426 (2020).
doi:10.1007/s00203-019-01743-8

Zhu, B., Wang, Z., Kanaparthi, D., Kublik, S., Ge, T., Casper, P., Schloter, M., Lüders, T.: Long-Read Amplicon Sequencing of Nitric Oxide Dismutase (nod) Genes Reveal Diverse Oxygenic Denitrifiers in Agricultural Soils and Lake Sediments. Microbial Ecology, 80(1), 243-247 (2020).
doi:10.15495/EPub_UBT_00005109

Ramsperger, A., Stellwag, A., Caspari, A., Fery, A., Lüders, T., Kress, H., Löder, M., Laforsch, C.: Structural Diversity in Early-Stage Biofilm Formation on Microplastics Depends on Environmental Medium and Polymer Properties. Water, 12(11), 3216 (2020).
doi:10.3390/w12113216

Michas, A., Harir, M., Lucio, M., Vestergaard, G., Himmelberg, A., Schmitt-Kopplin, P., Lüders, T., Hatzinikolaou, D., Schöler, A., Rabus, R., Schloter, M.: Sulfate Alters the Competition Among Microbiome Members of Sediments Chronically Exposed to Asphalt. Frontiers in Microbiology, 11, 556793 (2020).
doi:10.3389/fmicb.2020.556793

Sheffer, M., Uhl, G., Prost, S., Lüders, T., Ulrich, T., Bengtsson, M.: Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont. Microorganisms, 8(1), 8 (2020).
doi:10.3390/microorganisms8010008

2019

Kölbl, A., Bucka, F., Marschner, P., Mosley, L., Fitzpatrick, R., Schulz, S., Lüders, T., Kögel-Knabner, I.: Consumption and alteration of different organic matter sources during remediation of a sandy sulfuric soil. Geoderma, 347, 220-232 (2019).
doi:10.1016/j.geoderma.2019.04.006

Hünninghaus, M., Dibbern, D., Kramer, S., Koller, R., Pausch, J., Schloter-Hai, B., Urich, T., Kandeler, E., Bonkowski, M., Lüders, T.: Disentangling carbon flow across microbial kingdoms in the rhizosphere of maize. Soil Biology & Biochemistry, 134, 122-130 (2019).
doi:10.1016/j.soilbio.2019.03.007

Pilloni, G., Bayer, A., Ruth-Anneser, B., Fillinger, L., Engel, M., Griebler, C., Lüders, T.: Dynamics of Hydrology and Anaerobic Hydrocarbon Degrader Communities in A Tar-Oil Contaminated Aquifer. Microorganisms, 7(2), 46 (2019).
doi:10.3390/microorganisms7020046

Zhu, B., Wang, J., Bradford, L., Ettwig, K., Hu, B., Lüders, T.: Nitric Oxide Dismutase (nod) Genes as a Functional Marker for the Diversity and Phylogeny of Methane-Driven Oxygenic Denitrifiers. Frontiers in Microbiology, 10, 1577 (2019).
doi:10.3389/fmicb.2019.01577

2018

Stott, M., Lüders, T.: Editorial : Deep life, kia ora!. FEMS Microbiology Ecology, 94(11), fiy176 (2018).
doi:10.1093/femsec/fiy176

Karwautz, C., Kus, G., Stöckl, M., Neu, T., Lüders, T.: Microbial megacities fueled by methane oxidation in a mineral spring cave. The ISME Journal, 12, 87-100 (2018).
doi:10.1038/ismej.2017.146

Zhang, L., Lehmann, K., Totsche, K., Lüders, T.: Selective successional transport of bacterial populations from rooted agricultural topsoil to deeper layers upon extreme precipitation events. Soil Biology & Biochemistry, 124, 168-178 (2018).
doi:10.1016/j.soilbio.2018.06.012

Táncsics, A., Szalay, A., Farkas, M., Benedek, T., Szoboszlay, S., Szabó, I., Lüders, T.: Stable isotope probing of hypoxic toluene degradation at the Siklós aquifer reveals prominent role of Rhodocyclaceae. FEMS Microbiology Ecology, 94(6), fiy088 (2018).
doi:10.1093/femsec/fiy088

Bradford, L., Vestergaard, G., Táncsics, A., Zhu, B., Schloter, M., Lüders, T.: Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota. Frontiers in Microbiology, 9, 2696 (2018).
doi:10.3389/fmicb.2018.02696

Lüders, T.: Untersuchung prozessrelevanter mikrobieller Populationen mittels RNA-SIP. BIOspektrum, 24(3), 264-266 (2018).
doi:10.1007/s12268-018-0917-6

2017

Uksa, M., Buegger, F., Gschwendtner, S., Lüders, T., Kublik, S., Kautz, T., Athmann, M., Köpke, U., Munch, J., Schloter, M., Fischer, D.: Bacteria utilizing plant-derived carbon in the rhizosphere of Triticum aestivum change in different depths of an arable soil. Environmental Microbiology Reports, 9(6), 729-741 (2017).
doi:10.1111/1758-2229.12588

Lüders, T.: The ecology of anaerobic degraders of BTEX hydrocarbons in aquifers. FEMS Microbiology Ecology, 93(1), fiw220 (2017).
doi:10.1093/femsec/fiw220

Cardinale, M., Kaiser, D., Lüders, T., Schnell, S., Egert, M.: Microbiome analysis and confocal microscopy of used kitchen sponges reveal massive colonization by Acinetobacter, Moraxella and Chryseobacterium species. Scientific Reports, 7, 5791 (2017).
doi:10.1038/s41598-017-06055-9

Zhang, L., Lüders, T.: Micropredator niche differentiation between bulk soil and rhizosphere of an agricultural soil depends on bacterial prey. FEMS Microbiology Ecology, 93(9), fix103 (2017).
doi:10.1093/femsec/fix103

Herzyk, A., Fillinger, L., Larentis, M., Qiu, S., Maloszewski, P., Hünniger, M., Schmidt, S., Stumpp, C., Marozava, S., Knappett, P., Elsner, M., Meckenstock, R., Lüders, T., Griebler, C.: Response and recovery of a pristine groundwater ecosystem impacted by toluene contamination : A meso-scale indoor aquifer experiment. Journal of Contaminant Hydrology, 207, 17-30 (2017).
doi:10.1016/j.jconhyd.2017.10.004

Zhu, B., Bradford, L., Huang, S., Szalay, A., Leix, C., Weissbach, M., Táncsics, A., Drewes, J., Lüders, T.: Unexpected Diversity and High Abundance of Putative Nitric Oxide Dismutase (Nod) Genes in Contaminated Aquifers and Wastewater Treatment Systems. Applied and Environmental Microbiology, 83(4), e02750-16 (2017).
doi:10.1128/aem.02750-16

2016

Boeker, C., Lüders, T., Müller, M., Pander, J., Geist, J.: Alteration of physico-chemical and microbial properties in freshwater substrates by burrowing invertebrates. Limnologica, 59, 131-139 (2016).
doi:10.1016/j.limno.2016.05.007

Rabus, R., Boll, M., Heider, J., Meckenstock, R., Buckel, W., Einsle, O., Ermler, U., Golding, B., Gunsalus, R., Kroneck, P., Krüger, M., Lüders, T., Martins, B., Musat, F., Richnow, H., Schink, B., Seifert, J., Szaleniec, M., Treude, T., Ullmann, G., Vogt, C., von Bergen, M., Wilkes, H.: Anaerobic microbial degradation of hydrocarbons : from enzymatic reactions to the environment. Journal of Molecular Microbiology and Biotechnology, 26(1-3), 5-28 (2016).
doi:10.1159/000443997

Richnow, H., Lüders, T.: Editorial overview : Probing environmental processes and microbiome functions using stable isotopes as smart tracers in analytical biotechnology. Current Opinion in Biotechnology, 41, S. iv-vii (2016).
doi:10.1016/j.copbio.2016.09.002

von Netzer, F., Kuntze, K., Vogt, C., Richnow, H., Boll, M., Lüders, T.: Functional gene markers for fumarate-adding and dearomatizing key enzymes in anaerobic aromatic hydrocarbon degradation in terrestrial environments. Journal of Molecular Microbiology and Biotechnology, 26(1-3), 180-194 (2016).
doi:10.1159/000441946

Müller, H., Bosch, J., Griebler, C., Damgaard, L., Nielsen, L., Lüders, T., Meckenstock, R.: Long-distance electron transfer by cable bacteria in aquifer sediments. The ISME Journal, 10, 2010-2019 (2016).
doi:10.1038/ismej.2015.250

Gschwendtner, S., Engel, M., Lüders, T., Buegger, F., Schloter, M.: Nitrogen fertilization affects bacteria utilizing plant-derived carbon in the rhizosphere of beech seedlings. Plant and Soil, 407(1-2), 203-215 (2016).
doi:10.1007/s11104-016-2888-z

Griebler, C., Brielmann, H., Haberer, C., Kaschuba, S., Kellermann, C., Stumpp, C., Hegler, F., Kuntz, D., Walker-Hertkorn, S., Lüders, T.: Potential impacts of geothermal energy use and storage of heat on groundwater quality, biodiversity, and ecosystem processes. Environmental Earth Sciences, 75, 1391 (2016).
doi:10.1007/s12665-016-6207-z

Kramer, S., Dibbern, D., Moll, J., Hünninghaus, M., Koller, R., Krüger, D., Marhan, S., Urich, T., Wubet, T., Bonkowski, M., Buscot, F., Lüders, T., Kandeler, E.: Resource partitioning between bacteria, fungi, and protists in the detritusphere of an agricultural soil. Frontiers in Microbiology, 7, 1524 (2016).
doi:10.3389/fmicb.2016.01524

Lüders, T., Dumont, M., Bradford, L., Manefield, M.: RNA-stable isotope probing : from carbon flow within key microbiota to targeted transcriptomes. Current Opinion in Biotechnology, 41, 83-89 (2016).
doi:10.1016/j.copbio.2016.05.001

Vogt, C., Lüders, T., Richnow, H., Krüger, M., von Bergen, M., Seifert, J.: Stable isotope probing approaches to study anaerobic hydrocarbon degradation and degraders. Journal of Molecular Microbiology and Biotechnology, 26(1-3), 195-210 (2016).
doi:10.1159/000440806

2015

Meckenstock, R., Elsner, M., Griebler, C., Lüders, T., Stumpp, C., Aamand, J., Agathos, S., Albrechtsen, H., Bastiaens, L., Bjerg, P., Boon, N., Dejonghe, W., Huang, W., Schmidt, S., Smolders, E., Sørensen, S., Springael, D., van Breukelen, B.: Biodegradation : updating the concepts of control for microbial cleanup in contaminated aquifers. Environmental Science & Technology, 49(12), 7073-7081 (2015).
doi:10.1021/acs.est.5b00715

Kubryk, P., Kölschbach, J., Marozava, S., Lüders, T., Meckenstock, R., Niessner, R., Ivleva, N.: Exploring the Potential of Stable Isotope (Resonance) Raman Microspectroscopy and Surface-Enhanced Raman Scattering for the Analysis of Microorganisms at Single Cell Level. Analytical Chemistry, 87(13), 6622-6630 (2015).
doi:10.1021/acs.analchem.5b00673

Gründger, F., Jiménez, N., Thielemann, T., Straaten, N., Lüders, T., Richnow, H., Krüger, M.: Microbial methane formation in deep aquifers of a coal-bearing sedimentary basin, Germany. Frontiers in Microbiology, 6, 200 (2015).
doi:10.3389/fmicb.2015.00200

Höss, S., Frank-Fahle, B., Lüders, T., Traunspurger, W.: Response of bacteria and meiofauna to iron oxide colloids in sediments of freshwater microcosms. Environmental Toxicology and Chemistry, 34(11), 2660-2669 (2015).
doi:10.1002/etc.3091

Rühle, F., von Netzer, F., Lüders, T., Stumpp, C.: Response of Transport Parameters and Sediment Microbiota to Water Table Fluctuations in Laboratory Columns. Vadose Zone Journal, 14(5) (2015).
doi:10.2136/vzj2014.09.0116

Pfannes, K., Langenbach, K., Pilloni, G., Stührmann, T., Euringer, K., Lüders, T., Neu, T., Müller, J., Kästner, M., Meckenstock, R.: Selective elimination of bacterial faecal indicators in the Schmutzdecke of slow sand filtration columns. Applied Microbiology and Biotechnology, 99(23), 10323-10332 (2015).
doi:10.1007/s00253-015-6882-9

Einsiedl, F., Pilloni, G., Ruth-Anneser, B., Lüders, T., Griebler, C.: Spatial distributions of sulphur species and sulphate-reducing bacteria provide insights into sulphur redox cycling and biodegradation hot-spots in a hydrocarbon-contaminated aquifer. Geochimica et Cosmochimica Acta, 156, 207-221 (2015).
doi:10.1016/j.gca.2015.01.014

2014

Kleindienst, S., Herbst, F., Stagars, M., von Netzer, F., von Bergen, M., Seifert, J., Peplies, J., Amann, R., Musat, F., Lüders, T., Knittel, K.: Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps. The ISME Journal, 8, 2029-2044 (2014).
doi:10.1038/ismej.2014.51

Arango, L., Buddrus-Schiemann, K., Opelt, K., Lüders, T., Haesler, F., Schmid, M., Ernst, D., Hartmann, A.: Effects of glyphosate on the bacterial community associated with roots of transgenic Roundup Ready® soybean. European Journal of Soil Biology, 63, 41-48 (2014).
doi:10.1016/j.ejsobi.2014.05.005

Karwautz, C., Lüders, T.: Impact of hydraulic well restoration on native bacterial communities in drinking water wells. Microbes and Environments, 29(4), 363-369 (2014).
doi:10.1264/jsme2.ME14035

Kuppardt, A., Kleinsteuber, S., Vogt, C., Lüders, T., Harms, H., Chatzinotas, A.: Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer. Microbial Ecology, 68(2), 222-234 (2014).
doi:10.1007/s00248-014-0403-8

Dibbern, D., Schmalwasser, A., Lüders, T., Totsche, K.: Selective transport of plant root-associated bacterial populations in agricultural soils upon snowmelt. Soil Biology & Biochemistry, 69, 187-196 (2014).
doi:10.1016/j.soilbio.2013.10.040

Meckenstock, R., von Netzer, F., Stumpp, C., Lüders, T., Himmelberg, A., Hertkorn, N., Schmitt-Kopplin, P., Harir, M., Hosein, R., Haque, S., Schulze-Makuch, D.: Water droplets in oil are microhabitats for microbial life. Science, 345(6197), 673-676 (2014).
doi:10.1126/science.1252215

2013

Müller, M., Pander, J., Wild, R., Lüders, T., Geist, J.: The effects of stream substratum texture on interstitial conditions and bacterial biofilms : Methodological strategies. Limnologica, 43(2), 106-113 (2013).
doi:10.1016/j.limno.2012.08.002

von Netzer, F., Pilloni, G., Kleindienst, S., Krüger, M., Knittel, K., Gründger, F., Lüders, T.: Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems. Applied and Environmental Microbiology, 79(2), 543-552 (2013).
doi:10.1128/aem.02362-12

Larentis, M., Hörmann, K., Lüders, T.: Fine-scale degrader community profiling over an aerobic/anaerobic redox gradient in a toluene-contaminated aquifer. Environmental Microbiology Reports, 5(2), 225-234 (2013).
doi:10.1111/1758-2229.12004

2012

Scharroba, A., Dibbern, D., Hünninghaus, M., Kramer, S., Moll, J., Butenschön, O., Bonkowski, M., Buscot, F., Kandeler, E., Koller, R., Krüger, D., Lüders, T., Scheu, S., Rueß, L.: Effects of resource availability and quality on the structure of the micro-food web of an arable soil across depth. Soil Biology & Biochemistry, 50, 1-11 (2012).
doi:10.1016/j.soilbio.2012.03.002

Graue, J., Kleindienst, S., Lüders, T., Cypionka, H., Engelen, B.: Identifying fermenting bacteria in anoxic tidal-flat sediments by a combination of microcalorimetry and ribosome-based stable-isotope probing. FEMS Microbiology Ecology, 81(1), 78-87 (2012).
doi:10.1111/j.1574-6941.2011.01282.x

Lüders, T., Griebler, C., Häggblom, M.: Subsurface microbiology : the life below our feet. FEMS Microbiology Ecology, 81(1), 1 (2012).
doi:10.1111/j.1574-6941.2012.01399.x

Pilloni, G., Granitsiotis, M., Engel, M., Lüders, T.: Testing the limits of 454 pyrotag sequencing : reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes. PLoS One, 7(7), e40467 (2012).
doi:10.1371/journal.pone.0040467

2011

Beckmann, S., Lüders, T., Krüger, M., von Netzer, F., Engelen, B., Cypionka, H.: Acetogens and Acetoclastic Methanosarcinales Govern Methane Formation in Abandoned Coal Mines. Applied and Environmental Microbiology, 77(11), 3749-3756 (2011).
doi:10.1128/aem.02818-10

Pilloni, G., von Netzer, F., Engel, M., Lüders, T.: Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP. FEMS Microbiology Ecology, 78(1), 165-175 (2011).
doi:10.1111/j.1574-6941.2011.01083.x

Brielmann, H., Lüders, T., Schreglmann, K., Ferraro, F., Avramov, M., Hammerl, V., Blum, P., Bayer, P., Griebler, C.: Oberflächennahe Geothermie und ihre potenziellen Auswirkungen auf Grundwasserökosysteme. Grundwasser, 16(2), 77-91 (2011).
doi:10.1007/s00767-011-0166-9

2010

Selesi, D., Jehmlich, N., von Bergen, M., Schmidt, F., Rattei, T., Tischler, P., Lüders, T., Meckenstock, R.: Combined Genomic and Proteomic Approaches Identify Gene Clusters Involved in Anaerobic 2-Methylnaphthalene Degradation in the Sulfate-Reducing Enrichment Culture N47. Journal of Bacteriology, 192(1), 295-306 (2010).
doi:10.1128/JB.00874-09

Kunapuli, U., Jahn, M., Lüders, T., Geyer, R., Heipieper, H., Meckenstock, R.: Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons. International Journal of Systematic and Evolutionary Microbiology, 60(3), 686-695 (2010).
doi:10.1099/ijs.0.003525-0

Winderl, C., Penning, H., von Netzer, F., Meckenstock, R., Lüders, T.: DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment. The ISME Journal, 4, 1314-1325 (2010).
doi:10.1038/ismej.2010.54

Bombach, P., Chatzinotas, A., Neu, T., Kästner, M., Lüders, T., Vogt, C.: Enrichment and characterization of a sulfate-reducing toluene-degrading microbial consortium by combining in situ microcosms and stable isotope probing techniques. FEMS Microbiology Ecology, 71(2), 237-246 (2010).
doi:10.1111/j.1574-6941.2009.00809.x

Herrmann, S., Kleinsteuber, S., Chatzinotas, A., Kuppardt, S., Lüders, T., Richnow, H., Vogt, C.: Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing. Environmental Microbiology, 12(2), 401-411 (2010).
doi:10.1111/j.1462-2920.2009.02077.x

Anneser, B., Pilloni, G., Bayer, A., Lüders, T., Griebler, C., Einsiedl, F., Richters, L.: High resolution analysis of contaminated aquifer sediments and groundwater : what can be learned in terms of natural attenuation?. Geomicrobiology Journal, 27(2), 130-142 (2010).
doi:10.1080/01490450903456723

2009

Glaubitz, S., Lüders, T., Abraham, W., Jost, G., Jürgens, K., Labrenz, M.: ¹³C‐isotope analyses reveal that chemolithoautotrophic Gamma‐ and Epsilonproteobacteria feed a microbial food web in a pelagic redoxcline of the central Baltic Sea. Environmental Microbiology, 11(2), 326-337 (2009).
doi:10.1111/j.1462-2920.2008.01770.x

Rasche, F., Lüders, T., Schloter, M., Schäfer, S., Buegger, F., Gattinger, A., Hood-Nowotny, R., Sessitsch, A.: DNA-based stable isotope probing enables the identification of active bacterial endophytes in potatoes. New Phytologist, 181(4), 802-807 (2009).
doi:10.1111/j.1469-8137.2008.02744.x

Brielmann, H., Griebler, C., Schmidt, S., Michel, R., Lüders, T.: Effects of thermal energy discharge on shallow groundwater ecosystems. FEMS Microbiology Ecology, 68(3), 273-286 (2009).
doi:10.1111/j.1574-6941.2009.00674.x

Griebler, C., Lüders, T.: Microbial biodiversity in groundwater ecosystems. Freshwater Biology, 54(4), 649-677 (2009).
doi:10.1111/j.1365-2427.2008.02013.x

2008

Winderl, C., Anneser, B., Griebler, C., Meckenstock, R., Lüders, T.: Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume. Applied and Environmental Microbiology, 74(3), 792-801 (2008).
doi:10.1128/AEM.01951-07

Euringer, K., Lüders, T.: An optimised PCR/T-RFLP fingerprinting approach for the investigation of protistan communities in groundwater environments. Journal of Microbiological Methods, 75(2), 262-268 (2008).
doi:10.1016/j.mimet.2008.06.012

2007

Winderl, C., Schäfer, S., Lüders, T.: Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker. Environmental Microbiology, 9(4), 1035-1046 (2007).
doi:10.1111/j.1462-2920.2006.01230.x

Neufeld, J., Vohra, J., Dumont, M., Lüders, T., Manefield, M., Friedrich, M., Murrell, J.: DNA stable-isotope probing. Nature Protocols, 2(4), 860-866 (2007).
doi:10.1038/nprot.2007.109

Schwarz, J., Lüders, T., Eckert, W., Conrad, R.: Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA. Environmental Microbiology, 9(1), 223-237 (2007).
doi:10.1111/j.1462-2920.2006.01133.x

Whiteley, A., Thomson, B., Lüders, T., Manefield, M.: RNA stable-isotope probing. Nature Protocols, 2(4), 838-844 (2007).
doi:10.1038/nprot.2007.115

Kunapuli, U., Lüders, T., Meckenstock, R.: The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation. The ISME Journal, 1, 643-653 (2007).
doi:10.1038/ismej.2007.73

2006

Lüders, T., Kindler, R., Miltner, A., Friedrich, M., Kästner, M.: Identification of bacterial micropredators distinctively active in a soil microbial food web. Applied and Environmental Microbiology, 72(8), 5342-5348 (2006).
doi:10.1128/AEM.00400-06

Whiteley, A., Manefield, M., Lüders, T.: Unlocking the "microbial black box" using RNA-based stable isotope probing technologies. Current Opinion in Biotechnology, 17(1), 67-71 (2006).
doi:10.1016/j.copbio.2005.11.002

2005

Lu, Y., Lüders, T., Friedrich, M., Conrad, R.: Detecting active methanogenic populations on rice roots using stable isotope probing. Environmental Microbiology, 7(3), 326-336 (2005).
doi:10.1111/j.1462-2920.2005.00697.x

Chan, O., Claus, P., Casper, P., Ulrich, A., Lüders, T., Conrad, R.: Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment. Environmental Microbiology, 7(8), 1139-1149 (2005).
doi:10.1111/j.1462-2920.2005.00790.x

2004

Chin, K., Lüders, T., Friedrich, M., Klose, M., Conrad, R.: Archaeal community structure and pathway of methane formation on rice roots. Microbial Ecology, 47(1), 59-67 (2004).
doi:10.1007/s00248-003-2014-7

Lüders, T., Manefield, M., Friedrich, M.: Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients. Environmental Microbiology, 6(1), 73-78 (2004).
doi:10.1046/j.1462-2920.2003.00536.x

Lüders, T., Wagner, B., Claus, P., Friedrich, M.: Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil. Environmental Microbiology, 6(1), 60-72 (2004).
doi:10.1046/j.1462-2920.2003.00535.x

Lüders, T., Pommerenke, B., Friedrich, M.: Stable-isotope probing of microorganisms thriving at thermodynamic limits : syntrophic propionate oxidation in flooded soil. Applied and Environmental Microbiology, 70(10), 5778-5786 (2004).
doi:10.1128/AEM.70.10.5778-5786.2004

2003

Lüders, T., Friedrich, M.: Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Applied and Environmental Microbiology, 69(1), 320-326 (2003).
doi:10.1128/AEM.69.1.320-326.2003

Simankova, M., Kotsyurbenko, O., Lüders, T., Nozhevnikova, A., Wagner, B., Conrad, R., Friedrich, M.: Isolation and characterization of new strains of methanogens from cold terrestrial habitats. Systematic and Applied Microbiology, 26(2), 312-318 (2003).
doi:10.1078/072320203322346173

2002

Lüders, T., Friedrich, M.: Effects of amendment with ferrihydrite and gypsum on the structure and activity of methanogenic populations in rice field soil. Applied and Environmental Microbiology, 68(5), 2484-2494 (2002).
doi:10.1128/AEM.68.5.2484-2494.2002

2001

Ramakrishnan, B., Lüders, T., Dunfield, P., Conrad, R., Friedrich, M.: Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production. FEMS Microbiology Ecology, 37(2), 175-186 (2001).
doi:10.1016/S0168-6496(01)00158-1

Friedrich, M., Schmitt-Wagner, D., Lüders, T., Brune, A.: Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus. Applied and Environmental Microbiology, 67(10), 4880-4890 (2001).
doi:10.1128/AEM.67.10.4880-4890.2001

Weber, S., Lüders, T., Friedrich, M., Conrad, R.: Methanogenic populations involved in the degradation of rice straw in anoxic paddy soil. FEMS Microbiology Ecology, 38(1), 11-20 (2001).
doi:10.1111/j.1574-6941.2001.tb00877.x

Lüders, T., Chin, K., Conrad, R., Friedrich, M.: Molecular analyses of methyl‐coenzyme M reductase α‐subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environmental Microbiology, 3(3), 194-204 (2001).
doi:10.1046/j.1462-2920.2001.00179.x

2000

Lüders, T., Friedrich, M.: Archaeal population dynamics during sequential reduction processes in rice field soil. Applied and Environmental Microbiology, 66(7), 2732-2742 (2000).
doi:10.1128/AEM.66.7.2732-2742.2000

Ramakrishnan, B., Lüders, T., Conrad, R., Friedrich, M.: Effect of soil aggregate size on methanogenesis and archaeal community structure in anoxic rice field soil. FEMS Microbiology Ecology, 32(3), 261-270 (2000).
doi:10.1111/j.1574-6941.2000.tb00719.x

Books and Book sections

2022

Lüders, T., Táncsics, A.: The Ecology of Microbial Contaminant Degradation in Groundwater. In: Thomas Mehner, Klement Trockner (eds.): Encyclopedia of Inland Waters. Volume 3. 2nd Edition. - Amsterdam : Elsevier, 2022. - 428-436.
doi:10.1016/B978-0-12-819166-8.00180-8

2018

von Netzer, F., Granitsiotis, M., Szalay, A., Lüders, T.: Next-Generation Sequencing of Functional Marker Genes for Anaerobic Degraders of Petroleum Hydrocarbons in Contaminated Environments. In: Matthias Boll (eds.): Anaerobic Utilization of Hydrocarbons, Oils, and Lipids. - Cham : Springer, 2018.
doi:10.1007/978-3-319-33598-8_15-1

2017

Lüders, T.: DNA- and RNA-Based Stable Isotope Probing of Hydrocarbon Degraders. In: Terry J. McGenity (eds.): Hydrocarbon and Lipid Microbiology Protocols : Genetic, Genomic and System Analyses of Communities. - Berlin : Springer, 2017. - 181-197.
doi:10.1007/8623_2015_74

2014

Elsner, M., Griebler, C., Lüders, T., Meckenstock, R.: Assessing microbial activity and degradation pathways in the environment by measuring naturally occurring stable isotopes in organic compounds. In: Applications of Molecular Microbiological Methods. - Norfolk : Caister Academic Press, 2014.

Lüders, T., von Netzer, F.: Primers : Functional genes for anaerobic hydrocarbon degrading microbes. In: Terry J. McGenity (eds.): Hydrocarbon and Lipid Microbiology Protocols : Primers. - Berlin : Springer, 2014. - 39-55.
doi:10.1007/8623_2014_44

2013

Rasche, F., Schloter, M., Lüders, T., Sessitsch, A.: DNA-based stable isotope probing for identifying active bacterial endophytes in potato. In: Frans J. de Bruijn (eds.): Molecular Microbial Ecology of the Rhizosphere. Volume 1. - Hoboken, NJ : Wiley-Blackwell, 2013. - 413-421.
doi:10.1002/9781118297674.ch38

2010

Meckenstock, R., Lüders, T., Griebler, C., Selesi, D.: Microbial hydrocarbon degradation at coal gasification plants. In: Kenneth N. Timmis (eds.): Handbook of Hydrocarbon and Lipid Microbiology. - Berlin : Springer, 2010. - 2293-2312.
doi:10.1007/978-3-540-77587-4_167

Lüders, T.: Stable isotope probing of hydrocarbon-degraders. In: Kenneth N. Timmis (eds.): Handbook of Hydrocarbon and Lipid Microbiology. - Berlin : Springer, 2010. - 4011-4026.
doi:10.1007/978-3-540-77587-4_312

Other publications

2009

Griebler, C., Brielmann, H., Lüders, T., Schmidt, S.: Sustainable Energy Production from Geothermal Sources and Possible Effects to Groundwater Ecosystems. SILnews, 55, 17-18 (2009).

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