|Zeitvogel, F; Obst, M: ScatterJn: An ImageJ Plugin for Scatterplot-Matrix Analysis and Classification of Spatially Resolved Analytical Microscopy Data, Journal of Open Research Software, 4(1), 1-6 (2016), online: 2016-02-03, doi:10.5334/jors.89 [Link]|
We present ScatterJn, an ImageJ (and Fiji) plugin for scatterplot-based exploration and analysis of analytical microscopy data. In contrast to commonly used scatterplot tools, it handles more than two input images (or image stacks, respectively) by creating a matrix of pairwise scatterplots. The tool offers the possibility to manually classify pixels by selecting regions of datapoints in the scatterplots as well as in the spatial domain. We demonstrate its functioning using a set of elemental maps acquired by SEM-EDX mapping of a soil sample. The plugin is available at https://savannah.nongnu.org/projects/scatterjn.
|Fr. 2020-07-10 now|
12th BayCEER Workshop 2020: "Call for Abstracts" is open
Extreme redox oscillations in freshwater re-flooded acid sulfate soil wetlands: Effects on Fe, S, and trace metals geochemical behavior
Dissolved organic matter quality in differently managed forest ecosystems
Signaling of rhizosphere microbiome: key for plant health, development and nutrition
BayCEER Workshop 2020
Why Science Communication?
Stoichiometric controls of C and N cycling
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