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Fakultät für Biologie, Chemie und Geowissenschaften

Ökologische Mikrobiologie - Prof. Tillmann Lüders

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Publikationsliste Lehrstuhl Ökologische Mikrobiologie

-- 2020 --
Zhu, B; Wang, Z; Kanaparthi, D; Kublik, S; Ge, T; Casper, P; Schloter, M; Lueders, T: Long-Read Amplicon Sequencing of Nitric Oxide Dismutase (nod) Genes Reveal Diverse Oxygenic Denitrifiers in Agricultural Soils and Lake Sediments, Microbial Ecology, 80, 243-247 (2020), doi:https://doi.org/10.1007/s00248-020-01482-0 [Link] -- Details
Sheffer, MM; Uhl, G; Prost, S; Lueders, T; Ulrich, T; Bengtsson, M: Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont, Microorganisms, 8 (1) (2020), doi:https://doi.org/10.3390/microorganisms8010008 -- Details

-- 2019 --
Hünninghaus, M; Dibbern, D; Kramer, S; Koller, R; Pausch, J; Schloter-Hai, B; Urich, T; Kandeler, E; Bonkowski, M; Lüders, T: Disentangling carbon flow across microbial kingdoms in the rhizosphere of maize, Soil Biology and Biochemistry, 134, 122-130 (2019), doi:10.1016/j.soilbio.2019.03.007
Kölbl, A; Bucka, F; Marschner, P; Mosley, L; Fitzpatrick, R; Schulz, S; Lüders, T; Kögel-Knabner, I: Consumption and alteration of different organic matter sources during remediation of a sandy sulfuric soil, Geoderma, 347, 220-232 (2019), doi:10.1016/j.geoderma.2019.04.006
Pilloni, G; Bayer, A; Ruth-Anneser, B; Fillinger, L; Engel, M; Griebler, C; Lüders, T: Dynamics of Hydrology and Anaerobic Hydrocarbon Degrader Communities in A Tar-Oil Contaminated Aquifer, Microorganisms, 7 (2), 46 (2019), doi:2076-2607/7/2/46
Tancsics, A; Farkas, M; Horvath, B; Maroti, G; Bradford, LM; Lueders, T: Genome analysis provides insights into microaerobic toluene-degradation pathway of Zoogloea oleivorans BucT, Archives of Microbiology (2019), doi:https://doi.org/10.1007/s00203-019-01743-8 -- Details
Zeibich, L; Schmidt, O; Drake, HL: Fermenters in the earthworm gut: do transients matter?, FEMS Microbiology Ecology, 95 (2019), doi:10.1093/femsec/fiy221 -- Details
Zeibich, L; Schmidt, O; Drake, HL: Dietary polysaccharides: fermentation potentials of a primitive gut ecosystem, Environmental Microbiology, 21, 1436–1451 (2019) -- Details
Zeibich, L; Staege, M; Schmidt, O; Drake, HL: Amino acids and ribose: drivers of protein and RNA fermentation by ingested bacteria of a primitive gut ecosystem, Applied and Environmental Microbiology, 85 (2019), doi:10.1128/AEM.01297-19 -- Details
Zhu, B; Wang, J; Bradford, LM; Ettwig, K; Hu, B; Lüders, T: Nitric Oxide Dismutase (nod) Genes as a Functional Marker for the Diversity and Phylogeny of Methane-Driven Oxygenic Denitrifiers, Frontiers in Microbiology, 10, 1577 (2019), doi:10.3389/fmicb.2019.01577

-- 2018 --
Bradford, LM; Vestergaard, G; Táncsics, A; Zhu, B; Schloter, M; Lüders, T: Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota, Frontiers in Microbiology, 9, 2696 (2018), doi:10.3389/fmicb.2018.02696
Karwautz, C; Kus, G; Stöckl, M; Neu, TR; Lüders, T: Microbial megacities fueled by methane oxidation in a mineral spring cave, The ISME Journal, 12, 87-100 (2018), doi:10.1038/ismej.2017.146
Lüders, T: Untersuchung prozessrelevanter mikrobieller Populationen mittels RNA-SIP, BIOspektrum, 24(3), 264-266 (2018), doi:10.1007/s12268-018-0917-6
Stott, M; Lüders, T: Editorial: Deep life, kia ora!, FEMS Microbiology Ecology, 94(11), fiy176-fiy176 (2018), doi:10.1093/femsec/fiy176
Táncsics, A; Szalay, AR; Farkas, M; Benedek, T; Szoboszlay, S; Szabó, I; Lüders, T: Stable isotope probing of hypoxic toluene degradation at the Siklós aquifer reveals prominent role of Rhodocyclaceae, FEMS Microbiology Ecology, 94(6), fiy088 (2018), doi:10.1093/femsec/fiy088
von Netzer, F; Granitsiotis, MS; Szalay, AR; Lueders, T: Next-Generation Sequencing of Functional Marker Genes for Anaerobic Degraders of Petroleum Hydrocarbons in Contaminated Environments, , In: Boll M (ed.). Anaerobic Utilization of Hydrocarbons, Oils, and Lipids. Springer International Publishing: Cham. pp 1-20 (2018) [Link]
Zeibich, L; Schmidt, O; Drake, HL: Protein- and RNA-Enhanced Fermentation by Gut Microbiota of the Earthworm Lumbricus terrestris, Applied and Environmental Microbiology, 84(e00657-18) (2018), doi:10.1128/AEM.00657-18 -- Details
Zhang, L; Lehmann, K; Totsche, KU; Lüders, T: Selective successional transport of bacterial populations from rooted agricultural topsoil to deeper layers upon extreme precipitation events, Soil Biology and Biochemistry, 124, 168-178 (2018), doi:10.1016/j.soilbio.2018.06.012

-- 2017 --
Cardinale, M; Kaiser, D; Lüders, T; Schnell, S; Egert, M: Microbiome analysis and confocal microscopy of used kitchen sponges reveal massive colonization by Acinetobacter, Mo, Scientific Reports, 7(1), 5791 (2017), doi:10.1038/s41598-017-06055-9
Herzyk, A; Fillinger, L; Larentis, M; Qiu, S; Maloszewski, P; Hünniger, M; Schmidt, SI; Stumpp, C; Marozava, S; Knappett, PSK; Elsner, M; Meckenstock, R; Lüders, T; Griebler, C: Response and recovery of a pristine groundwater ecosystem impacted by toluene contamination – A meso-scale indoor aquifer experiment, Journal of Contaminant Hydrology, 207, 17-30 (2017), doi:10.1016/j.jconhyd.2017.10.004
Lüders, T: The ecology of anaerobic degraders of BTEX hydrocarbons in aquifers, FEMS Microbiology Ecology, 93(1), fiw220 (2017), doi:10.1093/femsec/fiw220
Meier, A; Hunger, S; Drake, H: Differential engagement of fermentative taxa in gut contents of the earthworm Lumbricus terrestris, Applied and Environmental Microbiology (2017) -- Details
Uksa, M; Buegger, F; Gschwendtner, S; Lüders, T; Kublik, S; Kautz, T; Athmann, M; Köpke, U; Munch, JC; Schloter, M; Fischer, D: Bacteria utilizing plant-derived carbon in the rhizosphere of Triticum aestivum change in different depths of an arable soil, Environmental Microbiology Reports, 9(6), 729-741 (2017), doi:10.1111/1758-2229.12588
Zhang, L; Lüders, T: Micropredator niche differentiation between bulk soil and rhizosphere of an agricultural soil depends on bacterial prey, FEMS Microbiology Ecology, 93(9), fix103 (2017), doi:10.1093/femsec/fix103
Zhu, B; Bradford, L; Huang, S; Szalay, A; Leix, C; Weissbach, M; Táncsics, A; Drewes, JE; Lüders, T: Unexpected Diversity and High Abundance of Putative Nitric Oxide Dismutase (Nod) Genes in Contaminated Aquifers and Wastewater Treatment Systems, Applied and Environmental Microbiology, 83(4) (2017), doi:10.1128/aem.02750-16

-- 2016 --
Boeker, C; Lüders, T; Mueller, M; Pander, J; Geist, J: Alteration of physico-chemical and microbial properties in freshwater substrates by burrowing invertebrates, Limnologica - Ecology and Management of Inland Waters, 59, 131-139 (2016), doi:10.1016/j.limno.2016.05.007
Braga, LPP; Yoshiura, CA; Borges, CD; Horn, MA; Brown, GG; Drake, HL; Tsai, SM: Disentangling the influence of earthworms in sugarcrane rhizosphere, Scientific Reports, 6, 38923 (2016)
Casadevall, A; Bertuzzi, S; Buchmeier, M; Davis, R; Drake, HL; Fang, F; Gilbert, J; Goldman, B; Imperiale, M; Matsumura, P; McAdam, A; Pasetti, M; Sandri-Goldin, R; Silhavy, T; Rice, L; Young, J-A; Shenk, T: ASM journals eliminate impact factor information from journal websites (Editorial), mBio (2016)
Griebler, C; Brielmann, H; Haberer, CM; Kaschuba, S; Kellermann, C; Stumpp, C; Hegler, F; Kuntz, D; Walker-Hertkorn, S; Lüders, T: Potential impacts of geothermal energy use and storage of heat on groundwater quality, biodiversity, and ecosystem processes, Environmental Earth Sciences, 75(20), 1391 (2016), doi:10.1007/s12665-016-6207-z
Gschwendtner, S; Engel, M; Lüders, T; Buegger, F; Schloter, M: Nitrogen fertilization affects bacteria utilizing plant-derived carbon in the rhizosphere of beech seedlings, Plant and Soil, 407, 203-215 (2016), doi:10.1007/s11104-016-2888-z
Hunger, S; Drake, HL; Gößner, AS; Schmidt, O: Formate-derived H2, a driver of hydrogenotrophic processes in the root-zone of a methane-emitting fen. Environmental Microbiology, Environmental Microbiology, 18 (9), 3106-3119 (2016) -- Details
Kramer, S; Dibbern, D; Moll, J; Huenninghaus, M; Koller, R; Krueger, D; Marhan, S; Urich, T; Wubet, T; Bonkowski, M; Buscot, F; Lüders, T; Kandeler, E: Resource partitioning between bacteria, fungi, and protists in the detritusphere of an agricultural soil, Frontiers in Microbiology, 7, 1524 (2016), doi:10.3389/fmicb.2016.01524
Lüders, T; Dumont, MG; Bradford, L; Manefield, M: RNA-stable isotope probing: from carbon flow within key microbiota to targeted transcriptomes, Current Opinion in Biotechnology, 41, 83-89 (2016), doi:10.1016/j.copbio.2016.02.023
Müller, H; Bosch, J; Griebler, C; Damgaard, LR; Nielsen, LP; Lüders, T; Meckenstock, RU: Long-distance electron transfer by cable bacteria in aquifer sediments, ISME J, 10, 2010-2019 (2016), doi:10.1038/ismej.2015.250
Rabus, R; Boll, M; Heider, J; Meckenstock, RU; Buckel, W; Einsle, O; Ermler, U; Golding, BT; Gunsalus, RP; Kroneck, PMH; Krüger, M; Lüders, T; Martins, BM; Musat, F; Richnow, HH; Schink, B; Seifert, J; Szaleniec, M; Treude, T; Ullmann, GM; Vogt, C; von Bergen, M; Wilkes, H: Anaerobic microbial degradation of hydrocarbons: from enzymatic reactions to the environment, J Mol Microbiol Biotechnol, 26(1-3), 5-28 (2016)
Richnow, H; Lüders, T: Editorial overview: Probing environmental processes and microbiome functions using stable isotopes as smart tracers in analytical biotechnology, Current Opinion in Biotechnology, 41, iv-vii (2016), doi:10.1016/j.copbio.2016.09.002
Schmidt, O; Hink, L; Horn, MA; Drake, HL: Peat: home to novel syntrophic species that feed acetate- and hydrogen-scavenging methanogens, ISME Journal, 10, 1954-1966 (2016)
Vogt, C; Lüders, T; Richnow, HH; Krüger, M; von Bergen, M; Seifert, J: Stable isotope probing approaches to study anaerobic hydrocarbon degradation and degraders, J Mol Microbiol Biotechnol, 26(1-3), 195-210 (2016)
von Netzer, F; Kuntze, K; Vogt, C; Richnow, HH; Boll, M; Lüders, T: Functional gene markers for fumarate-adding and dearomatizing key enzymes in anaerobic aromatic hydrocarbon degradation in terrestrial environments, J Mol Microbiol Biotechnol, 26(1-3), 180-194 (2016)

-- 2015 --
Drake, HL: PilZ-domain proteins of the plant pathogen Xanthomonas oryzae pv. oryzae function differentially in virulence. (Editorial), Applied and Environmental Microbiology, 81, 4233-4234 (2015)
Einsiedl, F; Pilloni, G; Ruth-Anneser, B; Lüders, T; Griebler, C: Spatial distributions of sulphur species and sulphate-reducing bacteria provide insights into sulphur redox cycling and biodegradation hot-spots in a hydrocarbon-contaminated aquifer, Geochimica et Cosmochimica Acta, 156, 207-221 (2015), doi:10.1016/j.gca.2015.01.014
Gruendger, F; Jiménez, N; Thielemann, T; Straaten, N; Lüders, T; Richnow, HH; Krüger, M: Microbial methane formation in deep aquifers of a coal-bearing sedimentary basin, Germany, Frontiers in Microbiology, 6, 200. doi: 10.3389/fmicb.2015.00200 (2015), doi:10.3389/fmicb.2015.00200
Höss, S; Frank-Fahle, B; Lüders, T; Traunspurger, W: Response of bacteria and meiofauna to iron oxide colloids in sediments of freshwater microcosms, Environmental Toxicology and Chemistry, 34(11), 2660-2669 (2015), doi:10.1002/etc.3091
Hunger, S; Gößner, AS; Drake, HL: Anaerobic Trophic Interactions of Contrasting Methane-emitting Mire Soils: Processes Versus Taxa, FEMS Microbiology Ecology, Ecol. 91, doi: 10.1093/femsec/fiv045 (2015) -- Details
Knorr, KH; Horn, MA; Borken, W: Significant non-symbiotic nitrogen fixation in Patagonian ombrotrophic bogs, Global Change Biology, 21, 2357-2365 (2015), doi:10.1111/gcb.12849 -- Details
Kubryk, P; Kölschbach, JS; Marozava, S; Lüders, T; Meckenstock, RU; Niessner, R; Ivleva, NP: Exploring the Potential of Stable Isotope (Resonance) Raman Microspectroscopy and Surface-Enhanced Raman Scattering for the Analysis of Microorganisms at Single Cell Level, Analytical Chemistry, 87(13), 6622-6630 (2015), doi:10.1021/acs.analchem.5b00673
Lüders, T: DNA- and RNA-Based Stable Isotope Probing of Hydrocarbon Degraders, , doi: 10.1007/8623\_2015\_74 (2015), doi:10.1007/8623_2015_74
Meckenstock, RU; Elsner, M; Griebler, C; Lüders, T; Stumpp, C; Aamand, J; Agathos, SN; Albrechtsen, H; Bastiaens, L; Bjerg, PL; Boon, N; Dejonghe, W; Huang, WE; Schmidt, SI; Smolders, E; Sørensen, SR; Springael, D; van Breukelen, BM: Biodegradation: updating the concepts of control for microbial cleanup in contaminated aquifers, Environmental Science & Technology, 49(12), 7073-7081 (2015), doi:10.1021/acs.est.5b00715
Palmer, K; Horn, MA: Denitrification Activity of a Remarkably Diverse Fen Denitrifier Community in Finnish Lapland Is N-Oxide Limited, PLoS ONE, 10(4), e0123123 (2015), doi:10.1371/journal.pone.0123123 -- Details
Pfannes, KR; Langenbach, KMW; Pilloni, G; Stührmann, T; Euringer, K; Lüders, T; Neu, TR; Müller, JA; Kästner, M; Meckenstock, RU: Selective elimination of bacterial faecal indicators in the Schmutzdecke of slow sand filtration columns, Applied Microbiology and Biotechnology, 99(23), 10323-10332 (2015), doi:10.1007/s00253-015-6882-9
Rühle, FA; von Netzer, F; Lüders, T; Stumpp, C: Response of Transport Parameters and Sediment Microbiota to Water Table Fluctuations in Laboratory Columns, Vadose Zone Journal, 14(5), doi:10.2136/vzj2014.09.0116 (2015), doi:10.2136/vzj2014.09.0116
Schmidt, O; Horn, MA; Kolb, S; Drake, HL: Temperature Impacts Differentially on the Methanogenic Food Web of Cellulose-Supplemented Peatland Soil, Environmental Microbiology, 17(3), 720-734 (2015) -- Details
Schulz, K; Hunger, S; Brown, GG; Tsai, SM; Cerri, CC; Conrad, R; Drake, HL: Methanogenic food web in gut contents of the methane-emitting earthworm Eudrilus eugeniae from Brazil, ISME Journal, 9, 1778-1792 (2015) -- Details

-- 2014 --
Arango, L; Buddrus-Schiemann, K; Opelt, K; Lüders, T; Haesler, F; Schmid, M; Ernst, D; Hartmann, A: Effects of glyphosate on the bacterial community associated with roots of transgenic Roundup Ready® soybean, European Journal of Soil Biology, 63, 41-48 (2014), doi:10.1016/j.ejsobi.2014.05.005
Dallinger, A; Horn, MA: Agricultural Soil and Drilosphere as Reservoirs of New and Unusual Assimilators of 2,4-Dichlorophenol Carbon, Environmental Microbiology, 16, 84-100 (2014) -- Details
Dibbern, D; Schmalwasser, A; Lüders, T; Totsche, KU: Selective transport of plant root-associated bacterial populations in agricultural soils upon snowmelt, Soil Biology and Biochemistry, 69, 187-196 (2014), doi:10.1016/j.soilbio.2013.10.040
Drake, HL: The genus Lactovum in Holzapfel, W.H., Wood, B.J.B. (eds.): Lactic Acid Bacteria: Biodiversity and Taxonomy, John Wiley & Sons, Ltd., 447-455 (2014) -- Details
Elsner, M; Griebler, C; Lueders, T; Meckenstock, RU: Assessing microbial activity and degradation pathways in the environment by measuring naturally occurring stable isotopes in organic compounds, , In: Skovhus TL, Caffrey S, Hubert C (eds). Molecular Methods and Applications in Microbiology. Caister Academic Press: Norfolk, UK (2014) [Link]
Härtig, C; Lohmayer, R; Kolb, S; Horn, MA; Inskeep, WP; Planer-Friedrich, B: Chemolithotrophic Growth of the Aerobic Hyperthermophilic Bacterium Thermocrinis ruber OC 14/7/2 on Monothioarsenate and Arsenite, FEMS Microbiology Ecology, 90, 747–760 (2014), doi:10.1111/1574-6941.12431 -- Details
Karwautz, C; Lüders, T: Impact of hydraulic well restoration on native bacterial communities in drinking water wells, Microbes Environ, 29(4), 363-369 (2014), doi:10.1264/jsme2.ME14035
Kleindienst, S; Herbst, F; Stagars, M; von Netzer, F; von Bergen, M; Seifert, J; Peplies, J; Amann, R; Musat, F; Lüders, T; Knittel, K: Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps, ISME J, 8, 2029-2044 (2014), doi:10.1038/ismej.2014.51
Kuppardt, A; Kleinsteuber, S; Vogt, C; Lüders, T; Harms, H; Chatzinotas, A: Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer, Microbial Ecology, 68(2), 222-234 (2014), doi:10.1007/s00248-014-0403-8
Lueders, T; von Netzer, F: Primers: Functional genes for anaerobic hydrocarbon degrading microbes, , In: McGenity TJ, Timmis KN, Nogales B (eds). Hydrocarbon and Lipid Microbiology Protocols. Springer Protocols Handbooks, Humana Press, Ney York (2014), doi:10.1007%2F8623_2014_44
Meckenstock, RU; von Netzer, F; Stumpp, C; Lüders, T; Himmelberg, AM; Hertkorn, N; Schmitt-Kopplin, P; Harir, M; Hosein, R; Haque, S; Schulze-Makuch, D: Water droplets in oil are microhabitats for microbial life, Science, 345(6197), 673-676 (2014), doi:10.1126/science.1252215
Schaffner, DW; Drake, HL: Botulinum neurotoxin subtype A4 originating from nontoxigenic Clostridium botulinum. (Editorial), Applied and Environmental Microbiology, 80, 7131-7132 (2014)
Wieczorek, A; Hetz, S; Kolb, S: Microbial Responses to Chitin and Chitosan in Oxic and Anoxic Agricultural Soil Slurries, Biogeosciences, 11, 3339-3352 (2014) -- Details

-- 2013 --
Antony, CP; Kumaresan, D; Hunger, S; Drake, HL; Murrell, JC; Shouche, YS: Microbiology of Lonar Lake and other soda lakes, ISME Journal, 7, 468-476 (2013) -- Details
Chatzinotas, A; Schellenberger, S; Glaser, K; Kolb, S: Assimilation of Cellulose-Derived Carbon by Microeukaryotes in Oxic and Anoxic Slurries of an Aerated Soil, Applied and Environmental Microbiology, 79(18), 5777-5781 (2013) -- Details
Depkat-Jakob, PS; Brown, GG; Tsai, SM; Horn, MA; Drake, HL: Emission of nitrous oxide and dinitrogen by diverse earthworm families from Brazil and resolution of associated denitrifying and nitrate-dissimilating taxa, FEMS Microbiology Ecology, 83, 375-391 (2013) -- Details
Ditterich, F; Poll, C; Pagel, H; Babin, D; Smalla, K; Horn, MA; Streck, T; Kandeler, E: Succession of bacterial and fungal MCPA degraders at the soil-litter interface, FEMS Microbiology Ecology, 86, 85-100 (2013)
Drake, HL; Küsel, K; Matthies, C: Acetogenic prokaryotes in Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., Thompson, F. (eds.): The Prokaryotes - Prokaryotic Physiology and Biochemistry, Springer-Verlag, Berlin, 3-60 (2013), doi:10.1007/978-3-642-30141-4_61
Kolb, S; Stacheter, A: Prerequisites for Amplicon Pyrosequencing of Microbial Methanol Utilizers in the Environment, Frontiers in Microbiology, 4, no 268 (pp. 1-11) (2013), doi:10.3389/fmicb.2013.00268 -- Details
Larentis, M; Hoermann, K; Lüders, T: Fine-scale degrader community profiling over an aerobic/anaerobic redox gradient in a toluene-contaminated aquifer, Environmental Microbiology Reports, 5, 225-234 (2013), doi:10.1111/1758-2229.12004
Liu, YJ; Liu, SJ; Drake, HL; Horn, MA: Consumers of 4-Chloro-2-Methylphenoxyacetic Acid from Agricultural Soil and Drilosphere Harbour cadA, r/sdpA, and tfdA-like Gene Encoded Oxygenases, FEMS Microbiology Ecology, 86, 114-129 (2013) -- Details
Mueller, M; Pander, J; Wild, R; Lüders, T; Geist, J: The effects of stream substratum texture on interstitial conditions and bacterial biofilms: Methodological strategies, Limnologica - Ecology and Management of Inland Waters, 43(2), 106-113 (2013), doi:10.1016/j.limno.2012.08.002
Rasche, F; Schloter, M; Lueders, T; Sessitsch, A: DNA-based stable isotope probing for identifying active bacterial endophytes in potato, , In: Molecular Microbial Ecology of the Rhizosphere, vol. 1 (F.J. de Bruijn, ed.), pp. 413-421, John Wiley & Sons, Inc.: Chichester, UK (2013), doi:10.1002/9781118297674.ch38
Stacheter, A; Noll, M; Lee, C; Selzer, M; Mertel, R; Glowik, B; Schulz, D; Lampert, N; Drake, HL; Kolb, S: Methanol Oxidation by Temperate Soils and Environmental Determinants of Associated Methylotrophs, ISME Journal, 7(5), 1051-1064 (2013) -- Details

-- 2012 --
Depkat-Jakob, PS; Hunger, S; Schulz, K; Brown, GG; Tsai, SM; Drake, HL: Emission of Methane by Eudrilus eugeniae and Other Earthworms from Brazil, Applied and Environmental Microbiology, 78, 3014-3019 (2012) -- Details
Graue, J; Kleindienst, S; Lüders, T; Cypionka, H; Engelen, B: Identifying fermenting bacteria in anoxic tidal-flat sediments by a combination of microcalorimetry and ribosome-based stable-isotope probing, FEMS Microbiology Ecology, 81(1), 78-87 (2012), doi:10.1111/j.1574-6941.2011.01282.x
Kolb, S; Horn, MA: Microbial CH4 and N2O consumption in acidic wetlands, Frontiers in Microbiology, 3, 1-8 (2012) -- Details
Lüders, T; Griebler, C; Häggblom, M: Subsurface microbiology: the life below our feet, FEMS Microbiology Ecology, 81(1), 1-1 (2012), doi:10.1111/j.1574-6941.2012.01399.x
Palmer, K; Biasi, C; Horn, MA: Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra, ISME Journal, 6, 1058-1077 (2012) -- Details
Palmer, K; Horn, MA: Actinobacterial nitrate reducers and Proteobacterial denitrifiers are abundant in N2O metabolizing palsa peat, Applied and Environmental Microbiology, 78, 5584–5596 (2012) -- Details
Pilloni, G; Granitsiotis, MS; Engel, M; Lüders, T: Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes, PLoS ONE, 7(7), e40467 (2012), doi:10.1371/journal.pone.0040467
Scharroba, A; Dibbern, D; Hünninghaus, M; Kramer, S; Moll, J; Butenschoen, O; Bonkowski, M; Buscot, F; Kandeler, E; Koller, R; Krüger, D; Lüders, T; Scheu, S; Ruess, L: Effects of resource availability and quality on the structure of the micro-food web of an arable soil across depth, Soil Biology and Biochemistry, 50, 1-11 (2012), doi:10.1016/j.soilbio.2012.03.002
Schellenberger, S; Drake, HL; Kolb, S: Impairment of Cellobiose-Degrading Soil Bacteria by Two Acidic Herbicides, FEMS Microbiology Letters, 327, 60-65 (2012) -- Details
von Netzer, F; Pilloni, G; Kleindienst, S; Krüger, M; Knittel, K; Gründger, F; Lüders, T: Enhanced gene detection assays for fumarate-adding enzymes allow uncovering anaerobic hydrocarbon degraders in terrestrial and marine systems, Applied and Environmental Microbiology, 79(2), 543-552 (2012), doi:10.1128/aem.02362-12

-- 2011 --
Beckmann, S; Lüders, T; Krüger, M; von Netzer, F; Engelen, B; Cypionka, H: Acetogens and Acetoclastic Methanosarcinales Govern Methane Formation in Abandoned Coal Mines, Applied and Environmental Microbiology, 77(11), 3749-3756 (2011), doi:10.1128/aem.02818-10
Brielmann, H; Lüders, T; Schreglmann, K; Ferraro, F; Avramov, M; Hammerl, V; Blum, P; Bayer, P; Griebler, C: Shallow geothermal energy usage and its potential impacts on groundwater ecosystems, Grundwasser, 16(2), 77-91 (2011), doi:10.1007/s00767-011-0166-9
Foesel, BU; Drake, HL; Schramm, A: Defluviimonas denitrificans gen. nov., sp. nov., and Pararhodobacter aggregans gen. nov., sp. nov., non-phototrophic Rhodobacteraceae from the biofilter of a marine aquaculture, Systematic and Applied Microbiology (2011) -- Details
Hämmerle, M; Hilgert, K; Horn, MA; Moos, R: Analysis of volatile alcohols in apple juices by an electrochemical biosensor measuring in the headspace above the liquid, Sensors and Actuators B Chemical, 158, 313-318 (2011) -- Details
Hunger, S; Gößner, AS; Drake, HL: Trophic Links Between the Acetogen Clostridium glycolicum KHa and the Fermentative Anaerobe Bacteroides xylanolyticus KHb, Isolated from Hawaiian Forest Soil, Applied and Environmental Microbiology, 77, 6281-6285 (2011) -- Details
Hunger, S; Schmidt, O; Hilgarth, M; Horn, MA; Kolb, S; Conrad, R; Drake, HL: Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil, Applied and Environmental Microbiology, 77, 3773-3785 (2011) -- Details
Kador, M; Horn, MA; Dettner, K: Novel oligonucleotide probes for in situ detection of pederin-producing endosymbionts of Paederus riparius rove beetles (Coleoptera: Staphylinidae), FEMS Microbiology Letters, 319, 73-81 (2011) -- Details
Khadem, AF; Pol, A; Wieczorek, A; Mohammadi, SS; Francoijs, KJ; Stunnenberg, HG; Jetten, MS; Op den Camp, HJ: Autotrophic methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin Benson Bassham cycle for carbon dioxide fixation, Journal of Bacteriology, 193(17), 4438-4446 (2011)
Kolb, S: Methanotrophe: Treibhausgas-vernichtende Mikroben in VAAM: Biospektrum, Spektrum Akademischer Verlag, 2, 146-149 (2011) -- Details
Kolb, S: Warum verschwindet das Treibhausgas Methan im Waldboden?, UBT Spektrum, Mai, 66-69 (2011)
Küsel, K; Drake, HL: Acetogens. In: Reitner, J., Thiel, V. (eds.), Encyclopedia of Geobiology, Springer Verlag, New York, DOI 10.1007/978-1-4020-9212-1, pp. 1-5 (2011) -- Details
Liu, YJ; Liu, SJ; Drake, HL; Horn, MA: Alphaproteobacteria Dominate Active 2-Methyl-4-Chlorophenoxyacetic Acid Herbicide Degraders in Agricultural Soil and Drilosphere, Environmental Microbiology, 13, 991-1009 (2011) -- Details
Liu, YJ; Zaprasis, A; Liu, SJ; Drake, HL; Horn, MA: The earthworm Aporrectodea caliginosa stimulates abundance and activity of phenoxyalkanoic acid herbicide degraders, ISME Journal, 5, 473-485 (2011) -- Details
Pilloni, G; von Netzer, F; Engel, M; Lüders, T: Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP, FEMS Microbiology Ecology, 78(1), 165-175 (2011), doi:10.1111/j.1574-6941.2011.01083.x
Schellenberger, S; Drake, HL; Kolb, S: Functionally Redundant Cellobiose-Degrading Soil Bacteria Respond Differentially to Oxygen, Applied and Environmental Microbiology, 77, 6043-6048 (2011) -- Details
Schmidt, O; Wüst, PK; Hellmuth, S; Borst, K; Horn, MA; Drake, HL: Novel [NiFe]- and [FeFe]-Hydrogenase Gene Transcripts Indicative of Active Facultative Aerobes and Obligate Anaerobes in Earthworm Gut Contents, Applied and Environmental Microbiology, 77, 5842-5850 (2011) -- Details
Wieczorek, A; Drake, HL; Kolb, S: Organic Acids and Ethanol Inhibit the Oxidation of Methane by Mire Methanotrophs, FEMS Microbiology Ecology, 77, 28-39 (2011) -- Details
Wüst, PK; Horn, MA; Drake, HL: Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content, ISME Journal, 5, 92-106 (2011) -- Details

-- 2010 --
Degelmann, DM; Borken, W; Drake, HL; Kolb, S: Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils, Applied and Environmental Microbiology, 76(10), 3228-3235 (2010), doi:10.1128/AEM.02730-09 -- Details
Anneser, B; Pilloni, G; Bayer, A; Lüders, T; Griebler, C; Einsiedl, F; Richters, L: High resolution analysis of contaminated aquifer sediments and groundwater - what can be learned in terms of natural attenuation?, Geomicrobiol. J, 27(2), 130-142 (2010)
Bombach, P; Chatzinotas, A; Neu, TR; Kästner, M; Lüders, T; Vogt, C: Enrichment and characterization of a sulfate-reducing toluene-degrading microbial consortium by combining in situ microcosms and stable isotope probing techniques, FEMS Microbiology Ecology, 71(2), 237-246 (2010)
Depkat-Jakob, PS; Hilgarth, M; Horn, MA; Drake, HL: Effect of Earthworm Feeding Guild on Ingested Dissimilatory Nitrate Reducers and Denitrifiers in the Alimentary Canal of the Earthworm, Applied and Environmental Microbiology, Vol. 76(18), 6205-6214 (2010) -- Details
Dörr, N; Glaser, B; Kolb, S: Methanotrophic Communities in Brazilian Ferralsols from Naturally Forested, Afforested and Agricultural Sites, Applied and Environmental Microbiology, 76(4), 1307-1310 (2010) -- Details
Herrmann, S; Kleinsteuber, S; Chatzinotas, A; Kuppardt, S; Lüders, T; Richnow, H; Vogt, C: Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing, Environmental Microbiology, 12(2), 401-411 (2010)
Kotzerke, A; Klemer, S; Kleineidam, K; Horn, MA; Drake, HL; Schloter, M; Wlke, BM: Manure Contaminated with the Antibiotic Sulfadiazine Impairs the Abundance of NirK- and NirS-Type Denitrifiers in the Gut of the Earthworm Eisenia Fetida, Biology and Fertility of Soils, 46, 415-418 (2010) -- Details
Kunapuli, U; Jahn, MK; Lüders, T; Geyer, R; Heipieper, HJ; Meckenstock, RU: Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons, Int J Syst Evol Microbiol, 60(3), 686-695 (2010), doi:10.1099/ijs.0.003525-0
Lueders, T: Stable isotope probing of hydrocarbon-degraders, , In: Timmis KN (ed). Handbook of Hydrocarbon and Lipid Microbiology. Springer: Berlin, Heidelberg. pp 4011-4026 (2010), doi:10.1007%2F978-3-540-77587-4_312
Meckenstock, RU; Lueders, T; Griebler, C; Selesi, D: Microbial hydrocarbon degradation at coal gasification plants, , In: Timmis KN (ed). Handbook of Hydrocarbon and Lipid Microbiology. Springer: Berlin, Heidelberg. pp 2293-2312 (2010), doi:10.1007%2F978-3-540-77587-4_167
Palmer, K; Drake, HL; Horn, MA: Association of Novel and Highly Diverse Acid-Tolerant Denitrifiers with N2O Fluxes of an Acidic Fen, Applied and Environmental Microbiology, 76 (4), 1125-1134 (2010) -- Details
Schellenberger, S; Kolb, S; Drake, HL: Metabolic Responses of Novel Cellulolytic and Saccharolytic Agricultural Soil Bacteria to Oxygen, Environmental Microbiology, 12 (4), 845-861 (2010) -- Details
Schmidt, O; Drake, HL; Horn, MA: Hitherto unknown [Fe-Fe]-Hydrogenase Gene Diversity in Anaerobes and Anoxic Enrichments from a Moderately Acidic Fen, Applied and Environmental Microbiology, 76 (6), 2027-2031 (2010) -- Details
Selesi, D; Jehmlich, N; von Bergen, M; Schmidt, F; Rattei, T; Tischler, P; Lüders, T; Meckenstock, RU: Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47, J. Bacteriol., 192(1), 295-306 (2010), doi:10.1128/jb.00874-09
Winderl, C; Penning, H; von Netzer, F; Meckenstock, RU; Lüders, T: DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment, ISME J, 4(10), 1314-1325 (2010)
Zaprasis, A; Liu, YJ; Liu, SJ; Drake, HL; Horn, MA: Abundance of Novel and Diverse tfdA-like Genes, Encoding Putative Phenoxyalkanoic Acid Herbicide-Degrading Dioxygenases, in Soil, Applied and Environmental Microbiology, 76 (1), 119-128 (2010) -- Details

-- 2009 --
Kolb, S: The Quest for Methane-Oxidizers in Forest Soil, Environmental Microbiology Reports, 1(5), 336-346 (2009) -- Details
Palmer, K; Drake, H; Horn, MA: Genome-Derived Criteria for Assigning Environmental narG and nosZ Sequences to Operational Taxonomic Units of Nitrate Reducers, Applied and Environmental Microbiology, 75, 5170-5174 (2009) -- Details
Brielmann, H; Griebler, C; Schmidt, SI; Michel, R; Lüders, T: Effects of thermal energy discharge on shallow groundwater ecosystems, FEMS Microbiol. Ecol., 68, 273-286 (2009)
Degelmann, DM; Kolb, S; Borken, W: Methane Oxidation Kinetics Differ in European Beech and Norway Spruce Soils, European Journal of Soil Science, 60, 499-506 (2009), doi:10.1111/j.1365-2389.2009.01138.x -- Details
Degelmann, DM; Kolb, S; Dumont, MG; Murrell, JC; Drake, HL: Enterobacteriaceae Facilitate the Anaerobic Degradation of Glucose by a Forest Soil, FEMS Microbiology Ecology, 68, 312-319 (2009) -- Details
Drake, HL: Lactovum. In: De Vos, P., Garrity, G. M., Jones, D., Frieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K. -H., Whitman, W. B. (eds.), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Vol. 3, Springer Verlag, New York, 722-723 (2009)
Drake, HL: Thermicanus. In: De Vos, P., Garrity, G. M., Jones, D., Frieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K. -H., Whitman, W. B. (eds.), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Vol. 3, Springer Verlag, New York, 454-455 (2009)
Drake, HL; Gößner, A: Sporomusa. In: De Vos, P., Garrity, G. M., Jones, D., Frieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K. -H., Whitman, W. B. (eds.), Bergey’s Manual of Systematic Bacteriology, 2nd Edition, Vol. 3, Springer Verlag, New York, 1112-1116 (2009)
Drake, HL; Horn, MA; Wüst, PK: Intermediary Ecosystem Metabolism as a Main Driver of Methanogenesis in Acidic Wetland Soil, Environmental Microbiology Reports, 1(5), 307-318 (2009) -- Details
Glaubitz, S; Lüders, T; Abraham, W; Jost, G; Jürgens, K; Labrenz, M: 13C-isotope analyses reveal that chemolithoautotrophic {Gamma}- and {Epsilonproteobacteria} feed a microbial food web in a pelagic redoxcline of the central {Baltic} {Sea, Environmental Microbiology, 11(2), 326-337 (2009), doi:10.1111/j.1462-2920.2008.01770.x
Griebler, C; Brielmann, H; Lüders, T; Schmidt, SI: Sustainable Energy Production from Geothermal Sources and Possible Effects to Groundwater Ecosystems, SILnews, 55, 17-18 (2009)
Griebler, C; Lüders, T: Microbial biodiversity in groundwater ecosystems, Freshwater Biol., 54(4), 649-677 (2009)
Horn, MA; Wüst, PK; Drake, HL: Der Regenwurmdarm – ein mobiles Schlaraffenland für Bodenanaerobier, BioSpectrum, Spektrum Akademischer Verlag GmbH, Heidelberg, Vol. 4, 377-379 (2009) -- Details
Kolb, S: Aerobic Methanol-Oxidizing Bacteria in Soil, FEMS Microbiology Letters, 300, 1-10 (2009), doi:DOI:10.1111/j.1574-6968.2009.01681.x -- Details
Rasche, F; Lüders, T; Schloter, M; Schaefer, S; Buegger, F; Gattinger, A; Hood-Nowotny, RC; Sessitsch, A: DNA-based stable isotope probing enables the identification of active bacterial endophytes in potatoes, New Phytologist, 181(4), 802-807 (2009)
Wüst, PK; Horn, MA; Drake, HL: Trophic Links between Fermenters and Methanogens in a Moderately Acidic Fen Soil, Environmental Microbiology, 11 (6), 1395-1409 (2009) -- Details
Wüst, PK; Horn, MA; Drake, HL: In Situ Hydrogen and Nitrous Oxide as Indicators of Concomitant Fermentation and Denitrification in the Alimentary Canal of the Earthworm Lumbricus terrestris, Applied and Environmental Microbiology, 75 (7), 1852-1859 (2009) -- Details
Wüst, PK; Horn, MA; Henderson, G; Janssen, PH; Rehm, B; Drake, HL: Gut-Associated Denitrification and In Vivo Emission of Nitrous Oxide by the Earthworm Families Megascolecidae and Lumbricidae in New Zealand, Applied and Environmental Microbiology, 75 (11), 3430-3436 (2009) -- Details

-- 2008 --
Blöthe, M; Akob, DM; Kostka, JE ; Göschel, K; Drake, HL; Küsel, K: pH Gradient-Induced Heterogeneity of Fe(III)-Reducing Microorganisms in Coal Mining-Associated Lake Sediments, Applied and Environmental Microbiology, 74 (4), 1019-1029 (2008) -- Details
Drake, HL; Gößner, AS: Acetogens: anaerobic gamblers at the oxic interface. In: Liu, S. J., Drake, H. L. (eds.), Microbes and the Environment: Perspectives and Challenges. Science Press, Beijing , 59-66 (2008)
Drake, HL; Gößner, AS; Daniel, SL: Old acetogens, new light, Annals NY Acad. Sci. , 1125, 100-128 (2008)
Drake, HL; Liu, SJ: Current and future perspectives on the environmental importance of microorganisms. In: Liu, S. J., Drake, H. L. (eds.), Microbes and the Environment: Perspectives and Challenges. Science Press, Beijing , 3-11 (2008)
Euringer, K; Lüders, T: An optimised PCR/T-RFLP fingerprinting approach for the investigation of protistan communities in groundwater environments, Journal of Microbiological Methods, 75(2), 262-268 (2008), doi:10.1016/j.mimet.2008.06.012
Foesel, B U; Gieseke, A; Schwermer, C; Stief, P; Koch, L; Cytryn, E; de la Torré, J; van Rijn, J; Minz, D; Drake, HL; Schramm, A: Nitrosomonas Nm143-like Ammonia Oxidizers and Nitrospira marina-like Nitrite Oxidizers dominate the Nitrifier Community in a Marine Aquaculture Biofilm, FEMS Microbiology Ecology, 63, 192-204 (2008) -- Details
Gößner, AS; Picardal, F; Tanner, RS; Drake, HL: Carbon metabolism of the moderately acid-tolerant acetogen Clostridium drakei isolated from peat, FEMS Microbiology Letters, 287, 236-242 (2008) -- Details
Hamberger, A; Horn, MA; Dumont, MG; Murrell, JC; Drake, HL: Anaerobic Consumers of Monosaccharides in a Moderately Acidic Fen, Applied and Environmental Microbiology, 74(10), 3112-3120 (2008) -- Details
Küsel, K; Blöthe, M; Schulz, D; Reiche, M; Drake, HL: Microbial reduction of iron and porewater biogeochemistry in acidic peatlands, Biogeosciences, 5, 1537-1549 (2008) -- Details
Liu, SJ; Drake, HL: Microbes and the Environment: Perspectives and Challenges, Science Press, Beijing, 160 pages (2008)
Liu, YJ; Li, PP; Zhao, KX; Wang, BJ; Jiang, CY; Drake, HL; Liu, SJ: Corynebacterium glutamicum contains 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases that display novel biochemical features, Applied and Environmental Microbiology, 74 (17)(5497-5503) (2008) -- Details
Maurer, D; Kolb, S; Haumaier, L; Borken, W: Inhibition of atmospheric methane oxidation by monoterpenes in Norway spruce and European beech soils, Soil Biology & Biochemistry, 40, 3014-3020 (2008) -- Details
Schmalenberger, A; Tebbe, CC; Kertesz, M; Drake, HL; Küsel, K: Two-dimensional single strand conformation polymorphism (SSCP) of 16S rRNA gene fragments reveals highly dissimilar bacterial communities in an acidic fen, European Journal of Soil Biology, 44, 495-500 (2008) -- Details
Whitehead, TR; Price, NP; Drake, HL; Cotta, MA: Catabolic Pathway for the Production of Skatole and Indole Acetic Acid by the Acetogen Clostridium drakei, Clostridium scatologenes, and Swine Manure, Applied and Environmental Microbiology, 74 (6), 1950-1953 (2008) -- Details
Winderl, C; Anneser, B; Griebler, C; Meckenstock, RU; Lüders, T: Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume, Applied and Environmental Microbiology, 74(3), 792-801 (2008), doi:10.1128/aem.01951-07

-- 2007 --
Bothe, H; Drake, HL: Interactions among organisms that result in enhanced activities N-cycle reactions. In: Bothe, H., Ferguson, S., Newton, W. E. (eds.) Biology of the Nitrogen Cycle, Elsevier, Amsterdam, 397-405 (2007)
Daniel, SL; Pilsl, C; Drake, HL: Anaerobic Oxalate Consumption by Microorganisms in Forest Soils, Research in Microbiology, 158, 303-309 (2007) -- Details
Drake, HL; Horn, MA: As the worm turns: the earthworm gut as a transient habitat for soil microbial biomes, Ann. Rev. Microbiol., 61, 169-189 (2007) -- Details
Edwards, L; Küsel, K; Drake, HL; Kostka, JE : Electron flow in acidic subsurface sediments co-contaminated with nitrate and uranium, Geochim. Cosmochim. Acta, 71, 643-654 (2007) -- Details
Foesel, BU; Gößner, AS; Drake, HL; Schramm, A: Geminicoccus roseus gen. nov., sp. nov., an aerobic phototrophic Alphaproteobacterium isolated from a marine aquaculture biofilter, Syst. Appl. Microbiology, 30, 581-586 (2007) -- Details
Kemnitz, D; Kolb, S; Conrad, R: High Abundance of Crenarchaeota in a Temperate Acidic Forest Soil, FEMS Microbiology Ecology, 60(3), 442-448 (2007) [Link] -- Details
Kunapuli, U; Lüders, T; Meckenstock, RU: The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation, ISME J, 1(7), 643-53 (2007), doi:10.1038/ismej.2007.73
Liu, XL; Wang, BJ; Jiang, CY; Zhao, KX; Drake, HL; Liu, SJ: Simultaneous biodegradation of nitrogen-containing aromatic compounds in a sequencing batch bioreactor, Journal of Environmental Sciences (China), 19, 530-535 (2007) -- Details
Neufeld, JD; Vohra, J; Dumont, MG; Lüders, T; Manefield, M; Friedrich, MW; Murrell, JC: DNA} stable-isotope probing, Nat. Protocols, 2(4), 860-866 (2007)
Schmalenberger, A; Drake, HL; Küsel, K: High unique diversity of sulfate-reducing prokaryotes characterized in a depth gradient in an acidic fen, Environmental Microbiology, 9(5), 1317-1328 (2007) -- Details
Schwarz, JIK; Lüders, T; Eckert, W; Conrad, R: Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA, Environmental Microbiology, 9(1), 223-237 (2007), doi:10.1111/j.1462-2920.2006.01133.x
Whiteley, AS; Thomson, B; Lüders, T; Manefield, M: RNA stable-isotope probing, Nat. Protocols, 2(4), 838-844 (2007)
Winderl, C; Schaefer, S; Lüders, T: Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase ({bssA}) genes as a functional marker, Environmental Microbiology, 9(4), 1035-1046 (2007), doi:10.1111/j.1462-2920.2006.01230.x

-- 2006 --
Bodelier, PLE; Sorrell, B; Drake, HL; Küsel, K; Hurek, T; Reinhold-Hurek, B; Lovell, C; Megonigal, P; Frenzel, P: Ecological aspects of microbes and microbial communities inhabiting the rhizosphere of wetland plants. In: Bobbink, R., Beltman, B., Verhoeven, J. T. A., Whigham, D. F. (eds.) Wetlands as a Natural Resource, Vol. 2 , Springer Verlag, New York, 205-238 (2006)
Drake, HL; Horn, MA: Earthworms as a transient heaven for terrestrial denitrifying microbes: a review, Engineering in Life Sciences, 6, 261-265 (2006)
Drake, HL; Küsel, K; Matthies, C: Acetogenic prokaryotes. In: Dworkin, M., et al. (eds.), The Prokaryotes, 3rd Edition, Vol. 2, Springer Verlag, New York, 354-420 (2006)
Drake, HL; Schramm, A; Horn, MA: Earthworm gut microbial biomes: their importance to soil microorganisms, denitrification, and the terrestrial production of the greenhouse gas N2O. In: König, H, Varma, A.(eds.) Intestinal Microorganisms of Termites and other Invertebrates, Springer Verlag, New York, 65-87 (2006) -- Details
Gößner, AS; Küsel, K; Schulz, D; Acker, G; Lovell, CR; Drake, HL: Trophic interaction of the aerotolerant anaerobe Clostridium intestinale and the acetogen Sporomusa rhizae sp. nov. isolated from roots of the black needlerush Juncus roemerianus, Microbiology, 152, 1209-1219 (2006) -- Details
Horn, MA; Drake, HL; Schramm, A: Nitrous oxide reductase genes (nosZ) of denitrifying microbial populations in soil and the earthworm gut are phylogenetically similar, Applied and Environmental Microbiology, 72(2), 1019-1026 (2006) -- Details
Horn, MA; Mertel, R; Kästner, M; Gehre, M; Drake, HL: In vivo emission of dinitrogen by earthworms via denitrifying bacteria in the gut, Applied and Environmental Microbiology, 72(2), 1013-1018 (2006) -- Details
Knief, C; Kolb, S; Bodelier, PLE; Lipski, A; Dunfield, P: The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration, Environmental Microbiology, 8(2), 321-333 (2006) -- Details
Küsel, K; Trinkwalter, T; Drake, HL; Devereux, R: Comparative evaluation of anaerobic bacterial communities associated with roots of submerged macrophytes growing in marine or brackish water sediments, J. Exp. Mar. Biol. Ecol., 337, 49-58 (2006)
Lüders, T; Kindler, R; Miltner, A; Friedrich, MW; Kaestner, M: Identification of bacterial micropredators distinctively active in a soil microbial food web, Applied and Environmental Microbiology, 72(8), 5342-5348 (2006), doi:10.1128/AEM.00400-06
Musat, N; Werner, U; Kolb, S; Dodenhof, T; Knittel, K; van Beusekom, JEE; Dubilier, N; Amann, R: Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Romo Basin, Wadden Sea, Systematic and Applied Microbiology, 29, 333-348 (2006) -- Details
Ogram, A; Bridgham, S; Corstanje, R; Drake, HL; Küsel, K; Mills, A; Newman, S; Portier, K; Wetzel, R: Linkages between microbial community composition and biogeochemical processes across scales. In: Bobbink, R., Beltman, B., Verhoeven, J. T. A., Whigham, D. F. (eds.) Wetlands as a Natural Resource, Vol. 2. , Springer Verlag, New York, 239-268 (2006)
Schnurr-Pütz, S; Baath, E; Guggenberger, G; Drake, HL; Küsel, K: Compaction of forest soil by logging machinery favours occurence of prokaryotes, FEMS Microbiology Ecology, 58, 503-516 (2006) -- Details
Whiteley, AS; Manefield, M; Lüders, T: Unlocking the `microbial black box` using RNA-based stable isotope probing technologies, Curr. Opin. Biotechnol., 17(1), 67-71 (2006)

-- 2005 --
Chan, OC; Claus, P; Casper, P; Ulrich, A; Lüders, T; Conrad, R: Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment, Environmental Microbiology, 7(8), 1139-1149 (2005)
Drake, HL; Küsel, K: Acetogenic clostridia. In: Dürre, P. (ed.), Handbook on Clostridia, CRC-Press, 719-746 (2005) -- Details
Horn, MA; Ihssen, J; Matthies, C; Schramm, A; Acker, G; Drake, HL: Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov., and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa, International Journal of systematic and evolutionary microbiology, 55, 1255-1265 (2005) -- Details
Kemnitz, D; Kolb, S; Conrad, R: Enrichment of Rice Cluster III Archaea from Soil and Phenotypic Characterization Prior to Isolation by using Real-Time PCR, Environmental Microbiology, 7(4), 553-565 (2005), doi:10.1111/j.1462-2920.2004.00723.x -- Details
Kolb, S; Cabrera, A; Kammann, C; Kämpfer, P; Conrad, R; Jäckel, U: Quantitative Impact of CO2 enriched Atmosphere on Abundances of Methanotrophic Bacteria in a Meadow Soil, Biology and Fertility of Soils, 41(5), 337-342 (2005), doi:doi 10.1007/s00374-005-0842-y -- Details
Kolb, S; Knief, C; Dunfield, P; Conrad, R: Abundance and Activity of Uncultured Methanotrophic Bacteria Involved in the Consumption of Atmospheric Methane in Two Forest Soils, Environmental Microbiology, 7(8), 1150-1161 (2005), doi:10.1111/j.1462-2920.2005.00791.x -- Details
Lu, Y; Lüders, T; Friedrich, MW; Conrad, R: Detecting active methanogenic populations on rice roots using stable isotope probing, Environmental Microbiology, 7(3), 326-336 (2005)
Ricke, P; Kolb, S; Braker, G: Application of a Newly Developed ARB Integrated in silico T-RFLP Tool Reveals the Importance of a Novel pmoA Sequence Cluster in an Upland Soil, Applied and Environmental Microbiology, 71(3), 1671-1673 (2005) -- Details

-- 2004 --
Chin, KJ; Lüders, T; Friedrich, MW; Klose, M; Conrad, R: Archaeal community structure and pathway of methane formation on rice roots, Microbial Ecology, 47(1), 59-67 (2004)
Daniel, SL; Pilsl, C; Drake, HL: Oxalate metabolism by the acetogenic bacterium Moorella thermoacetica, FEMS Microbiology Letters, 231, 39-43 (2004) -- Details
Drake, HL; Daniel, SL: Physiology of the thermophilic acetogen Moorella thermoacetica, Research in Microbiology, 155, 869-883 (2004) -- Details
Drake, HL; Küsel, K; Matthies, C: Acetogenic prokaryotes. In: Dworkin, M., et al. (eds.), The Prokaryotes, 3rd Edition: An Evolving Electronic Resource for the Microbiological Community, release 3.17, August 2004, Springer Verlag, New York (2004)
Küsel, K; Alewell, C: Riparian zones in a forested catchment: hot spots for microbial reductive processes in Matzner, E.: Ecological Studies, Biogeochemistry of forested catchments in a changing environment: a German case study, Springer Verlag, 172, 377-398 (2004)
Loy, A; Küsel, K; Lehner, A; Drake, HL; Wagner, M: Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages, Applied and Environmental Microbiology, Vol. 70, No. 12, 6998-7009 (2004) -- Details
Lüders, T; Manefield, M; Friedrich, MW: Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients, Environmental Microbiology, 6(1), 73-78 (2004), doi:10.1046/j.1462-2920.2003.00536.x
Lüders, T; Pommerenke, B; Friedrich, MW: Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil, Applied and Environmental Microbiology, 70(10), 5778-5786 (2004)
Lüders, T; Wagner, B; Claus, P; Friedrich, MW: Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil, Environmental Microbiology, 6(1), 60-72 (2004)
Matthies, C; Gößner, A; Acker, G; Schramm, A; Drake, HL: Lactovum miscens gen. nov., sp. nov., an aerotolerant, psychrotolerant, mixed-fermentative anaerobe from acidic forest soil, Research in Microbiology, 155, 847-854 (2004) -- Details
Müller, V; Inkamp, F; Rauwolf, A; Küsel, K; Drake, HL: Molecular and cellular biology of acetogenic bacteria in Nakano, M., Zuber, P. (eds): Strict and Facultative Anaerobes: Medical and Environmental Aspects, Horizon Scientific Press, United Kingdom, 251-281 (2004) -- Details
Nielsen, JL; Schramm, A; Bernhard, AE; van den Engh, GJ; Stahl, DA: Flow Cytometry-Assisted Cloning of Specific Sequence Motifs from Complex 16S rRNA Gene Libraries , Applied and Environmental Microbiology, Vol. 70, No. 12, 7550-7554 (2004)

-- 2003 --
Altmann, D; Stief, P; Amann, R; De Beer, D; Schramm, A: In situ Distribution and Activity of Nitrifying Bacteria, Environmental Microbiology, 5, 798-803 (2003) -- Details
Drake, HL; Küsel, K: How the Diverse Physiologic Potentials of Acetogens Determine Their In Situ Realities in Ljungdahl L. G. et al.: Biochemistry and Physiology of Anaerobic Bacteria, Springer, 171-190 (2003) -- Details
Horn, MA; Matthies, C; Küsel, K; Schramm, A; Drake, HL: Hydrogenotrophic Methanogenesis by Moderately Acid-Tolerant Methanogens of a Methane-Emitting Acidic Peat, Applied and Environmental Microbiology, 69, 74-83 (2003) -- Details
Horn, MA; Schramm, A; Drake, HL: The Earthworm Gut: An Ideal Habitat for Ingested N2O-Producing Microorganisms, Applied and Environmental Microbiology, 69, 1662-1669 (2003) -- Details
Ihssen, J; Horn, MA; Gößner, A; Matthies, C; Schramm, A; Drake, HL: N2O-Producing Microorganisms in the Gut of the Earthworm Aporrectodea caliginosa are Indicative of Ingested Soil Bacteria, Applied and Environmental Microbiology, 69, 1655-1661 (2003) -- Details
Kolb, S; Knief, C; Stubner, S; Conrad, R: Quantitative Detection of Methanotrophs in Soil by Novel pmoA-Targeted Real-Time PCR Assays, Applied and Environmental Microbiology, 69(5), 2423-2429 (2003) -- Details
Küsel, K: Microbial cycling of iron and sulfur in acidic coal mining lake sediments, Water, Air and Soil Pollution, 3, 67-90 (2003) -- Details
Küsel, K; Chabbi, A; Trinkwalter, T: Microbial Process Associated with Roots of Bulbous Rush Coated with Iron Plaques, Microb Ecol, 46, 302-311 (2003)
Lüders, T; Friedrich, MW: Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts, Applied and Environmental Microbiology, 69(1), 320-326 (2003)
Schramm, A: In situ analysis of structure and activity of the nitrifying community in biofilms, aggregates, and sediments, Geomicrobiology Journal, 20, 313-333 (2003) -- Details
Schramm, A; Davidson, SK; Dodsworth, JA; Drake, HL; Stahl, DA; Dubilier, N: Acidovorax-like Symbionts in the Nephridia of Earthworms, Environmental Microbiology, 5, 804-809 (2003) -- Details
Seifritz, C; Drake, HL; Daniel, SL: Nitrite as an Energy-Conserving Electron Sink for the Acetogenic Bacterium Moorella thermoacetica, Current Microbiology, 46, 329-333 (2003) -- Details
Simankova, MV; Kotsyurbenko, OR; Lüders, T; Nozhevnikova, AN; Wagner, B; Conrad, R; Friedrich, MW: Isolation and characterization of new strains of methanogens from cold terrestrial habitats, Systematic and Applied Microbiology, 26(2), 312-318 (2003)
Stief, P; Schramm, A; Altmann, D; De Beer, D: Temporal variation of nitrification rates in experimental freshwater sediments enriched with ammonia or nitrite, FEMS Microbiology Ecology, 46, 63-71 (2003) -- Details
Youhnovski, N; Schulz, D; Schwarz, C; Spiteller, G; Schubert, K: Determination of Hydroxyoctadecadienoic Acids, Zeitung der Naturforscher, 58c, 268-276 (2003)

-- 2002 --
Drake, HL; Küsel, K; Matthies, C: Ecological consequences of the phylogenetic and physiological diversities of acetogens, Ant. van Leeuwenhoek, 81, 203-213 (2002) -- Details
Gieseke, A; Arnz, P; Amann, R; Schramm, A: Simultaneous P and N removal in a sequencing batch biofilm reactor: insights from reactor- and microscale investigations, Water Research, 36, 501-509 (2002) -- Details
Karnholz, A; Küsel, K; Gößner, A; Schramm, A; Drake, HL: Tolerance and Metabolic Response of Acetogenic Bacteria toward Oxygen, Applied and Environmental Microbiology, 68, 1005-1009 (2002) -- Details
Küsel, K; Roth, U; Drake, HL: Microbial reduction of Fe(III) in the presence of oxygen under low pH conditions, Environmental Microbiology, 4(7), 414-421 (2002) -- Details
Küsel, K; Wagner, C; Trinkwalter, T; Gößner, A; Drake, HL: Microbial reduction of Fe(III) and turnover of acetate in Hawaiian soils, FEMS Microbiology Ecology, 40, 73-81 (2002) -- Details
Llobet-Brossa, E; Rabus, R; Böttcher, ME; Könecke, M; Finke, N; Schramm, A; Meyer, RL; Grötzschel, S; Rosselló-Mora, R; Amann, R: Community structure and activity of sulfate-reducing bacteria in an intertidal surface sediment: a multi-method approach, Aquatic Microbial Ecology, 29, 211-226 (2002)
Lüders, T; Friedrich, MW: Effects of amendment with ferrihydrite and gypsum on the structure and activity of methanogenic populations in rice field soil, Applied and Environmental Microbiology, 68(5), 2484-2494 (2002)
Regenspurg, S; Gößner, A; Peiffer, S; Küsel, K: Potential remobilization of toxic anions during the reduction of arsenated and chromated schwertmannite by the dissimilatory Fe(III)-reducing bacterium Acidiphilium cryptum JF-5, Water, Air and Soil Pollution, 2, 57-67 (2002)
Reith, F; Drake, HL; Küsel, K: Anaerobic activities of bacteria and fungi in moderately acidic conifer and deciduous leaf litter, FEMS Microbiology Ecology, 41, 27-35 (2002) -- Details
Schramm, A; Fuchs, BM; Nielsen, JL; Tonolla, M; Stahl, DA: Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries, Environmental Microbiology, 4, 713-720 (2002) -- Details
Seifritz, C; Fröstl, JM; Drake, HL; Daniel, SL: Influence of nitrate on oxalate- and glyoxylate-dependent growth and acetogenesis by Moorella thermoacetica, Arch. Microbiol., 178, 457-464 (2002) -- Details
Vogelsang, CH; Schramm, A; Picioreanu, C; Van Loosdrecht, M; Østgaard, K: Microbial community analysis by FISH for mathematical modelling of selective enrichment of gel-entrapped nitrifiers obtained from domestic wastewater, Hydrobiologia, 469, 165-178 (2002)

-- 2001 --
Friedrich, MW; Schmitt-Wagner, D; Lüders, T; Brune, A: Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus, Applied and Environmental Microbiology, 67(10), 4880-4890 (2001)
Gieseke, A; Purkhold, U; Wagner, M; Amann, R; Schramm, A: Community Structure and Activity Dynamics of Nitrifying Bacteria in a Phosphate-Removing Biofilm, Applied and Environmental Microbiology, 67/3, 1351-1362 (2001) -- Details
Küsel, K; Karnholz, A; Trinkwalter, T; Devereux, R; Acker, G; Drake, HL: Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots, Applied and Environmental Microbiology, 67, 4734-4741 (2001) -- Details
Küsel, K; Roth, U; Trinkwalter, T; Peiffer, S: Effect of pH on the anaerobic microbial cycling of sulfur in mining-impacted freshwater lake sediments, Environ. Experim. Botany, 46, 213-223 (2001) -- Details
Lüders, T; Chin, KJ; Conrad, R; Friedrich, M: Molecular analyses of methyl-coenzyme M reductase alpha-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage, Environmental Microbiology, 3(3), 194-204 (2001)
Matthies, C; Kuhner, CH; Acker, G; Drake, HL: <i>Clostridium uliginosum</i> sp. nov., a novel acid-tolerant, anaerobic bacterium with connecting filaments, International Journal of systematic and evolutionary microbiology, 51, 1119-1125 (2001) -- Details
Ramakrishnan, B; Lüders, T; Dunfield, PF; Conrad, R; Friedrich, MW: Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production, FEMS Microbiol. Ecol., 37(2), 175-186 (2001)
Weber, S; Lüders, T; Friedrich, MW; Conrad, R: Methanogenic populations involved in the degradation of rice straw in anoxic paddy soil, FEMS Microbiology Ecology, 38(1), 11-20 (2001)

-- 2000 --
Kuhner, CH; Matthies, C; Acker, G; Schmittroth, M; Gößner, A; Drake, HL: Clostridium akagii sp. nov. and Clostridium acidisoli sp. nov., acid-tolerant, N2-fixing clostridia isolated from acidic forest soil and litter, Int. J. Syst. Bacteriol., 50, 873-881 (2000) -- Details
Küsel, K; Dorsch, T: Effect of Supplemental Electron Donors on the Microbial Reduction of Fe(III), Sulfate, and CO2 in Coal Mining-Impacted Freshwater Lake Sediments, Microb Ecol, 40, 238-249 (2000) -- Details
Küsel, K; Dorsch, T; Acker, G; Stackebrandt, E; Drake, HL: Clostridium scatologenes strain SL1 isolated as an acetogenic bacterium from acidic sediments, Int. J. Syst. Bacteriol., 50, 537-546 (2000) -- Details
Lüders, T; Friedrich, M: Archaeal population dynamics during sequential reduction processes in rice field soil, Applied and Environmental Microbiology, 66(7), 2732-2742 (2000)
Matthies, C; Evers, S; Ludwig, W; Schink, B: Anaerovorax odorimutans gen. nov. sp. nov., a putrescine-fermenting, strictly anaerobic bacterium, Int. J. Syst. Bacteriol., 50, 1591-1594 (2000) -- Details
Matthies, C; Springer, N; Ludwig, W; Schink, B: Pelospora glutarica gen. nov., sp nov., a glutarate-fermenting, strictly anaerobic, spore-forming bacterium , International Journal of systematic and evolutionary microbiology, 50, 645-648 (2000) -- Details
Peine, A; Küsel, K; Tritschler, A; Peiffer, S: Electron flow in an iron-rich acidic sedimant - evidence for an acidity-driven iron cycle, Limnol. Oceanogr., 45(5), 1077-1087 (2000) -- Details
Ramakrishnan, B; Lüders, T; Conrad, R; Friedrich, M: Effect of soil aggregate size on methanogenesis and archaeal community structure in anoxic rice field soil, FEMS Microbiology Ecology, 32(3), 261-270 (2000)
Schramm, A; De Beer, D; Gieseke, A; Amann, R: Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm, Environmental Microbiology, 2, 680-686 (2000) -- Details

-- 1999 --
Gößner, A; Devereux, R; Ohnemüller, N; Acker, G; Stackebrandt, E; Drake, HL: Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica, Applied and Environmental Microbiology, 65/11, 5124-5133 (1999) -- Details
Küsel, K; Dorsch, T; Acker, G; Stackebrandt, E: Microbial reduction of Fe (III) in acidic sediments: Isolation of acidiphilium cryptum JF-5 capable of coupling the reduction of Fe (III) to the oxidation of glucose, Applied and Environmental Microbiology, 65, 3633-3640 (1999) -- Details
Küsel, K; Drake, HL: Microbial turnover of low molecular weight organic acids during leaf litter decomposition, Soil Biology Biochemistry, 31, 107-118 (1999) -- Details
Küsel, K; Pinkart, HC; Drake, HL; Devereux, R: Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the seagrass Halodule wrightii, Applied and Environmental Microbiology, 65, 5117-5123 (1999)
Küsel, K; Wagner, C; Drake, HL: Enumeration and metabolic product profiles of the anaerobic microflora in the mineral soil and litter of a beech forest, FEMS Microbiology Ecology, 29, 91-103 (1999) -- Details
Matthies, C; Grießhammer, A; Schmittroth, M; Drake, HL: Evidence for involvement of gut-associated dentrifying bacteria in emission of nitrous oxide (N2O) by earthworms obtained from garden and forest soils, Applied and Environmental Microbiology, 65/8, 3599-3604 (1999) -- Details
Seifritz, C; Fröstl, JM; Drake, HL; Daniel, SL: Glycolate as a metabolic substrate for the acetogen Moorella thermoacetica, FEMS Microbiology Letters, 170, 399-405 (1999) -- Details

-- 1998 --
Frank, C; Schwarz, U; Matthies, C; Drake, HL: Metabolism of aromatic aldehydes as cosubstrates by the acetogen Clostridium formicoaceticum, Arch. Microbiol., 170, 427-434 (1998) -- Details
Limmer, C; Drake, HL: Effects of carbon, nitrogen, and electron acceptor availability on anaerobic N2 fixation in a beech forest soil, Soil Biology Biochemistry, 30, 153-158 (1998) -- Details
Michalzik, B; Küsel, K; Solinger, St; Matzner, E: Dynamics of DOC and DON in forest soils, Mitteilungen der Deutschen Bodenkundlichen Gesellschaft, 87, 225-236 (1998) -- Details

-- 1997 --
Braus-Stromeyer, S; Schnappauf, G; Braus, GH; Gößner, A; Drake, HL: Carbonic Anhydrase in Acetobacterium woodii and Other Acetogenic Bacteria, J. Bacteriology, 179/22, 7197-7200 (1997) -- Details
Drake, HL: Acetogens: what they do in the laboratory versus elsewhere, Bio Factors, 6, 77-78 (1997)
Drake, HL; Daniel, SL; Küsel, K; Matthies, C; Kuhner, C; Braus-Stromeyer, S: Acetogenic bacteria: what are the in situ consequences of their diverse metabolic versatilities? , Bio Factors, 6, 13-24 (1997) -- Details
Karsten, G: Mikrobielle Populationen und Prozesse im Darm von Regenwürmern (Oligochaeta,Lumbricidae) in Bayreuther Institut für Terrestrische Ökosystemforschung (BITÖK): Bayreuther Forum Ökologie, Selbstverlag, 43, 1-292 (1997) -- Details
Karsten, GR; Drake, HL: Denitrifying bacteria in the earthworm gastrointestinal tract and the in vivo emission of nitrous oxide (N2O) by earthworms, Applied and Environmental Microbiology, 63, 1878-1882 (1997) -- Details
Kuhner, CH; Grießhammer, A; Drake, HL; Frank, C; Schmittroth, M; Acker, G; Gößner, A: Sporomusa silvacetica sp. nov., an acetogenic bacterium isolated from aggregated forest soil, Int. J. Syst. Bacteriol., 47, 352-358 (1997) -- Details
Matthies, C; Erhard, HP; Drake, HL: Effects of pH on the comparative culturability of fungi and bacteria from acidic and less acidic forest soils, J. Basic Microbiology, 37, 335-343 (1997) -- Details

-- 1996 --
Allison, MJ; Daniel, SL; Cornick, N: Oxalate-degrading bacteria in Khan,SR (ed.): Calcium oxalate in biological systems, CRC Press, 131-168 (1996)
Drake, HL: Regulation of the C1 metabolism of acetogens: metabolic by-passes and ecological implications in Lidstrom,ME and Tabita,FR (eds.): Microbial Growth on C+1+ Compounds, Kluwer Academic Publishers, The Netherlands, 72-79 (1996)
Drake, HL; Aumen, NG; Kuhner, C; Wagner, C; Grießhammer, A; Schmittroth, M: Anaerobic microflora of Everglades sediments: effects of nutrients on population profiles and activities, Applied and Environmental Microbiology, 62, 486-493 (1996) -- Details
Fröstl, JM; Seifritz, C; Drake, HL: Effect of nitrate on the autotrophic metabolism of the acetogens Clostridium thermoautotrophicum and Clostridium thermoaceticum, J. Bacteriology, 178, 4597-4603 (1996) -- Details
Küsel, K: Anaerober Abbau von organischem Kohlenstoff in Waldböden - Acetat als Bindeglied anearober und aerober Prozesse in Bayreuther Institut für Terrestrische Ökosystemforschung (BITÖK): Bayreuther Forum Ökologie, Selbstverlag, 32, 1-158 (1996) -- Details
Küsel, K; Drake, HL: Anaerobic capacities of leaf litter, Applied and Environmental Microbiology, 62, 4216-4219 (1996) -- Details
Limmer, C: N2-Fixierung in Waldböden in Bayreuther Institut für Terrestrische Ökosystemforschung (BITÖK): Bayreuther Forum Ökologie, Selbstverlag, 35, 1-80 (1996) -- Details
Limmer, C; Drake, HL: Nonsymbiotic N2 fixation by acidic and pH-neutral forest soils: aerobic and anaerobic differntials, Soil Biology Biochemistry, 28/2, 177-183 (1996) -- Details
Misoph, MM; Daniel, SL; Drake, HL: Bidirectional usage of ferulate by the acetogen Peptostreptococcus productusU-1: CO2 and aromatic acrylate groups as competing electron acceptors, Microbiology, 142, 1983-1988 (1996) -- Details
Misoph, MM; Drake, HL: Effect of CO2 on the fermentation capacities of the acetogen Peptostreptococcus productus U-1, J. Bacteriology, 178, 3140-3145 (1996) -- Details
Parekh, M; Drake, HL; Daniel, SL: Bidirectional Transformation of aromatic aldehydes by Desulfovibrio desulfuricans under nitrate-dissimilating conditions, Lett. Appl. Mircobiol., 22, 115-120 (1996)
Wagner, C; Grießhammer, A; Drake, HL: Acetogenic capacities and the anearobic turnover of carbon in a Kansas prairie soil, Applied and Environmental Microbiology, 62, 494-500 (1996) -- Details

-- 1995 --
Drake, HL: Regulation of the CO2-fixation potentials and substrate/product diversity of acetogenic bacteria, Proc. of the 3rd Intern. Conf. on CO+2+ Utilization, 61-63 (1995)
Karsten, G; Drake, HL: Comparative Assessment of the Aerobic and Anaerobic Microfloras of Earthworm Guts and Forest Soils, Applied and Environmental Microbiology, 61,3, 1039-1044 (1995)
Küsel, K; Drake, HL: Effects of environmental parameters on the formation and turnover of acetate by forest soils, Applied and Environmental Microbiology, 61, 3667-3675 (1995)

-- 1994 --
Akagi, JM; Drake, HL; Kim, JH; Gevertz, D: Thiosulfate and trithionate reductases in Peck Jr,HD and Le Gall,J (eds.): Methods in Enzymology: Inorganic Microbial Sulfur Metabolism, Academic Press, San Diego, 243, 260-270 (1994)
Drake, HL: Acetogenesis, acetogenic bacteria, and the acetyl-CoA "Wood/Ljungdahl" pathway: past and current perspectives in Drake,HL (ed.): Acetogenesis, Chapman and Hall, New York, 3-60 (1994)
Drake, HL; Daniel, SL; Matthies, C; Küsel, K: Acetogenesis: Reality in the laboratory, uncertainty elsewhere in Drake,HL (ed.): Acetogenesis, Chapman and Hall, New York, 273-302 (1994)
Gößner, A; Daniel, SL; Drake, HL: Acetogenesis coupled to the oxidation of aromatic aldehyde groups, Arch. Microbiol., 161, 126-131 (1994)
Küsel, K; Drake, HL: Acetate synthesis in soil from a Bavarian beech forest, Applied and Environmental Microbiology, 60, 1370-1373 (1994)

-- 1993 --
Daniel, SL; Drake, HL: Oxalate- and glyoxylate-dependent acetogenesis by Clostridium thermoaceticum, Applied and Environmental Microbiology, 59, 3062-3069 (1993)
Drake, HL: CO2 reductant, and the autotrophic acetyl-CoA pathway: alternative origins and destinations in Lidstrom,ME and Tabita,FR (eds.): Microbial Growth on C+1+ Compounds, Kluwer Academic Publishers, The Netherlands, 493-507 (1993)
Matthies, C; Freiberger, A; Drake, HL: Fumarate dissimilation and differential reductant flow by Clostridium formicoaceticum and Clostridium aceticum, Arch. Microbiol., 160, 273-278 (1993)
Seifritz, C; Daniel, SL; Gößner, A; Drake, HL: Nitrate as a preferred electron sink for the acetogen Clostridium thermoaceticum, J. Bacteriology, 175, 8008-8013 (1993)

-- 1992 --
Drake, HL: Acetogenesis and acetogenic bacteria, Encyclopedia of Microbiology, 1, 1-15 (1992)
Lux, MF; Drake, HL: Re-examination of the metabolic potential of the acetogens Clostridium aceticum and Clostridium formicoaceticum: chemolithoautotrophic and aromatic-dependent growth, FEMS Microbiology Letters, 95, 49-56 (1992)
Parekh, M; Keith, ES; Daniel, SL; Drake, HL: Comparative evaluation of the metabolic potentials of different strains of Peptostreptococcus productus: utilization and transformation of aromatic compounds, FEMS Microbiology Letters, 94, 69-74 (1992)

-- 1991 --
Daniel, SL; Keith, ES; Yang, H; Lin, YS; Drake, HL: Utilization of methoxylated aromatic compounds by the acetogen Clostridium thermoaceticum: expression and specificity of the CO-dependent O-demethylating activity, Biochemical and Biophysical Research Communications, 180, 416-422 (1991)

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