Harold L. Drake: Publications

Peer reviewed

2020

Zeibich, L., Guhl, J., Drake, H.: Impact of water content and dietary organic carbon richness on gut bacteria in the earthworm Lumbricus terrestris. FEMS Microbes, 1(1) (2020).
doi:10.1093/femsmc/xtaa002

2019

Zeibich, L., Schmidt, O., Drake, H.: Dietary Polysaccharides : Fermentation Potentials of a Primitive Gut Ecosystem. Environmental Microbiology, (2019).
doi:10.1111/1462-2920.14556

Zeibich, L., Staege, M., Schmidt, O., Drake, H.: Amino acids and ribose : drivers of protein and RNA fermentation by ingested bacteria of a primitive gut ecosystem. Applied and Environmental Microbiology, 85 (2019).
doi:10.1128/AEM.01297-19

2018

Zeibich, L., Schmidt, O., Drake, H.: Protein- and RNA-Enhanced Fermentation by Gut Microbiota of the Earthworm Lumbricus terrestris. Applied and Environmental Microbiology, 84(11) (2018).
doi:10.1128/AEM.00657-18

Zeibich, L., Schmidt, O., Drake, H.: Fermenters in the Earthworm Gut : Do Transients matter?. FEMS Microbiology Ecology, 95(2) (2018).
doi:10.1093/femsec/fiy221

2017

Meier, A., Hunger, S., Drake, H.: Differential engagement of fermentative taxa in gut contents of the earthworm Lumbricus terrestris. Applied and Environmental Microbiology, in press (2017).
doi:10.1128/AEM.01851-17

2016

Braga, L., Yoshiura, C., Borges, C., Horn, M., Brown, G., Drake, H., Tsai, S.: Disentangling the influence of earthworms in sugarcrane rhizosphere. Scientific Reports, 6, No. 38923 (2016).
doi:10.1038/srep38923

Schmidt, O., Hink, L., Horn, M., Drake, H.: Peat : home to novel syntrophic species that feed acetate- and hydrogen-scavenging methanogens. The ISME Journal, 10(8), 1954-1966 (2016).
doi:10.1038/ismej.2015.256

Hunger, S., Schmidt, O., Gößner, A., Drake, H.: Formate-derived H2, a driver of hydrogenotrophic processes in the root-zone of a methane-emitting fen. Environmental Microbiology, 18(9), 3106-3119 (2016).
doi:10.1111/1462-2920.13301

Casadevall, A., Bertuzzi, S., Buchmeier, M., Davis, R., Drake, H., Fang, F., Gilbert, J., Goldman, B., Imperiale, M., Matsumura, P., McAdam, A., Pasetti, M., Sandri-Goldin, R., Silhavy, T., Rice, L., Young, J., Shenk, T.: Editorial: ASM journals eliminate impact factor information from journal websites. mBio, 7(4), e01150-16 (2016).
doi:10.1128/mBio.01150-16

2015

Schmidt, O., Horn, M., Kolb, S., Drake, H.: Temperature impacts differentially on the methanogenic food web of cellulose-supplemented peatland soil. Environmental Microbiology, 17(3), 720-734 (2015).
doi:10.1111/1462-2920.12507

Schulz, K., Hunger, S., Brown, G., Tsai, S., Cerri, C., Conrad, R., Drake, H.: Methanogenic food web in gut contents of the methane-emitting earthworm Eudrilus eugeniae from Brazil. The ISME Journal, 9(8), 1778-1792 (2015).
doi:10.1038/ismej.2014.262

Drake, H.: Editorial: PilZ Domain Proteins of the Plant Pathogen Xanthomonas oryzae pv. oryzae Function Differentially in Virulence. Applied and Environmental Microbiology, 81(13), 4233-4234 (2015).
doi:10.1128/AEM.01322-15

Hunger, S., Gößner, A., Drake, H.: Anaerobic trophic interactions of contrasting methane-emitting mire soils : processes versus taxa. FEMS Microbiology Ecology, 91(5), 1-14 (2015).
doi:10.1093/femsec/fiv045

2013

Antony, C., Kumaresan, D., Hunger, S., Drake, H., Murrell, J., Shouche, Y.: Microbiology of Lonar Lake and other soda lakes. The ISME Journal, 7(3), 468-476 (2013).
doi:10.1038/ismej.2012.137

Depkat-Jakob, P., Brown, G., Tsai, S., Horn, M., Drake, H.: Emission of nitrous oxide and dinitrogen by diverse earthworm families from Brazil and resolution of associated denitrifying and nitrate-dissimilating taxa. FEMS Microbiology Ecology, 83(2), 375-391 (2013).
doi:10.1111/j.1574-6941.2012.01476.x

Liu, Y., Liu, S., Drake, H., Horn, M.: Consumers of 4‐chloro‐2‐methylphenoxyacetic acid from agricultural soil and drilosphere harbor cadA, r/sdpA, and tfdA‐like gene encoding oxygenases. FEMS Microbiology Ecology, 86(1), 114-129 (2013).
doi:10.1111/1574-6941.12144

2012

Stacheter, A., Noll, M., Lee, C., Selzer, M., Glowik, B., Ebertsch, L., Mertel, R., Schulz, D., Lampert, N., Drake, H., Kolb, S.: Methanol oxidation by temperate soils and environmental determinants of associated methylotrophs. The ISME Journal, 7(5), 1051-1064 (2012).
doi:10.1038/ismej.2012.167

Schellenberger, S., Drake, H., Kolb, S.: Impairment of cellulose- and cellobiose-degrading soil Bacteria by two acidic herbicides. FEMS Microbiology Letters, 327(1), 60-65 (2012).
doi:10.1111/j.1574-6968.2011.02460.x

Depkat-Jakob, P., Hunger, S., Schulz, K., Brown, G., Tsai, S., Drake, H.: Emission of methane by Eudrilus eugeniae and other earthworms from Brazil. Applied and Environmental Microbiology, 78(8), 3014-3019 (2012).
doi:10.1128/AEM.07949-11

2011

Hunger, S., Gößner, A., Drake, H.: Trophic links between the acetogen Clostridium glycolicum KHa and the fermentative anaerobe Bacteroides xylanolyticus KHb, isolated from Hawaiian forest soil. Applied and Environmental Microbiology, 77(17), 6281-6285 (2011).
doi:10.1128/AEM.05519-11

Wieczorek, A., Drake, H., Kolb, S.: Organic acids and ethanol inhibit the oxidation of methane by mire methanotrophs. FEMS Microbiology Ecology, 77(1), 28-39 (2011).
doi:10.1111/j.1574-6941.2011.01080.x

Schmidt, O., Kaul, P., Hellmuth, S., Borst, K., Horn, M., Drake, H.: Novel [NiFe]- and [FeFe]-hydrogenase gene transcripts indicative of active facultative aerobes and obligate anaerobes in earthworm gut contents. Applied and Environmental Microbiology, 77(17), 5842-5850 (2011).
doi:10.1128/AEM.05432-11

Schellenberger, S., Drake, H., Kolb, S.: Functionally redundant cellobiose-degrading soil bacteria respond differentially to oxygen. Applied and Environmental Microbiology, 77(17), 6043-6048 (2011).
doi:10.1128/AEM.00564-11

Liu, Y., Zaprasis, A., Liu, S., Drake, H., Horn, M.: The earthworm Aporrectodea caliginosa stimulates abundance and activity of phenoxyalkanoic acid herbicide degraders. The ISME Journal, 5(3), 473-485 (2011).
doi:10.1038/ismej.2010.140

Fösel, B., Drake, H., Schramm, A.: Defluviimonas denitrificans gen. nov., sp. nov., and Pararhodobacter aggregans gen. nov., sp. nov., non-phototrophic Rhodobacteraceae from the biofilter of a marine aquaculture. Systematic and Applied Microbiology, 34(7), 498-502 (2011).
doi:10.1016/j.syapm.2011.08.006

Hunger, S., Schmidt, O., Hilgarth, M., Horn, M., Kolb, S., Conrad, R., Drake, H.: Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil. Applied and Environmental Microbiology, 77(11), 3773-3785 (2011).
doi:10.1128/AEM.00282-11

Wüst, P., Horn, M., Drake, H.: Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content. The ISME Journal, 5(1), 92-106 (2011).
doi:10.1038/ismej.2010.99

Liu, Y., Liu, S., Drake, H., Horn, M.: Alphaproteobacteria dominate active 2-Methyl-4-Chlorophenoxyacetic acid herbicide degraders in agricultural soil and drilosphere. Environmental Microbiology, 13(4), 991-1009 (2011).
doi:10.1111/j.1462-2920.2010.02405.x

2010

Schellenberger, S., Kolb, S., Drake, H.: Metabolic responses of novel cellulolytic and saccharolytic agricultural soil Bacteria to oxygen. Environmental Microbiology, 12(4), 845-861 (2010).
doi:10.1111/j.1462-2920.2009.02128.x

Kotzerke, A., Klemer, S., Kleineidam, K., Horn, M., Drake, H., Schloter, M., Wilke, B.: Manure contaminated with the antibiotic sulfadiazine impairs the abundance of nirK- and nirS-type denitrifiers in the gut of the earthworm Eisenia fetida. Biology and Fertility of Soils, 46(4), 415-418 (2010).
doi:10.1007/s00374-009-0434-3

Schmidt, O., Drake, H., Horn, M.: Hitherto unknown [Fe-Fe]-hydrogenase gene diversity in anaerobes and anoxic enrichments from a moderately acidic fen. Applied and Environmental Microbiology, 76(6), 2027-2031 (2010).
doi:10.1128/AEM.02895-09

Depkat-Jakob, P., Hilgarth, M., Horn, M., Drake, H.: Effect of earthworm feeding guild on ingested dissimilatory nitrate reducers and denitrifiers in the alimentary canal of the earthworm. Applied and Environmental Microbiology, 76(18), 6205-6214 (2010).
doi:10.1128/AEM.01373-10

Degelmann, D., Borken, W., Drake, H., Kolb, S.: Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils. Applied and Environmental Microbiology, 76(10), 3228-3235 (2010).
doi:10.1128/AEM.02730-09

Palmer, K., Drake, H., Horn, M.: Association of novel and highly diverse acid-tolerant denitrifiers with N2O fluxes of an acidic fen. Applied and Environmental Microbiology, 76(4), 1125-1134 (2010).
doi:10.1128/AEM.02256-09

Zaprasis, A., Liu, Y., Liu, S., Drake, H., Horn, M.: Abundance of novel and diverse tfdA-like genes, encoding putative phenoxyalkanoic acid herbicide-degrading dioxygenases, in soil. Applied and Environmental Microbiology, 76(1), 119-128 (2010).
doi:10.1128/AEM.01727-09

2009

Wüst, P., Horn, M., Drake, H.: Trophic links between fermenters and methanogens in a moderately acidic fen soil. Environmental Microbiology, 11(6), 1395-1409 (2009).
doi:10.1111/j.1462-2920.2009.01867.x

Horn, M., Wüst, P., Drake, H.: Der Regenwurmdarm – ein mobiles Schlaraffenland für Bodenanaerobier. BIOspektrum, 15(4), 377-379 (2009).

Drake, H., Horn, M., Wüst, P.: Intermediary ecosystem metabolism as a main driver of methanogenesis in acidic wetland soil. Environmental Microbiology Reports, 1(5), 307-318 (2009).
doi:10.1111/j.1758-2229.2009.00050.x

Wüst, P., Horn, M., Drake, H.: In situ hydrogen and nitrous oxide as indicators of concomitant fermentation and denitrification in the alimentary canal of the earthworm Lumbricus terrestris. Applied and Environmental Microbiology, 75(7), 1852-1859 (2009).
doi:10.1128/AEM.02745-08

Wüst, P., Horn, M., Henderson, G., Janssen, P., Rehm, B., Drake, H.: Gut-associated denitrification and in vivo emission of nitrous oxide by the earthworm families Megascolecidae and Lumbricidae in New Zealand. Applied and Environmental Microbiology, 75(11), 3430-3436 (2009).
doi:10.1128/AEM.00304-09

Palmer, K., Drake, H., Horn, M.: Genome-derived criteria for assigning environmental narG and nosZ sequences to operational taxonomic units of nitrate reducers. Applied and Environmental Microbiology, 75(15), 5170-5174 (2009).
doi:10.1128/AEM.00254-09

Degelmann, D., Kolb, S., Dumont, M., Murrell, J., Drake, H.: Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil. FEMS Microbiology Ecology, 68(3), 312-319 (2009).
doi:10.1111/j.1574-6941.2009.00681.x

2008

Schmalenberger, A., Tebbe, C., Kertesz, M., Drake, H., Küsel, K.: Two-dimensional single strand conformation polymorphism (SSCP) of 16S rRNA gene fragments reveals highly dissimilar bacterial communities in an acidic fen. European Journal of Soil Biology, 44(5-6), 495-500 (2008).
doi:10.1016/j.ejsobi.2008.07.002

Blöthe, M., Akob, D., Kostka, J., Göschel, K., Drake, H., Küsel, K.: pH gradient-induced heterogeneity of Fe(III)-reducing microorganisms in coal mining-associated lake sediments. Applied and Environmental Microbiology, 74(4), 1019-1029 (2008).
doi:10.1128/AEM.01194-07

Drake, H., Gößner, A., Daniel, S.: Old acetogens, new light. Annals of the New York Academy of Sciences, 1125(1), 100-128 (2008).
doi:10.1196/annals.1419.016

Fösel, B., Gieseke, A., Schwermer, C., Stief, P., Koch, L., Cytryn, E., de la Torré, J., van Rijn, J., Minz, D., Drake, H., Schramm, A.: Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm. FEMS Microbiology Ecology, 63(2), 192-204 (2008).
doi:10.1111/j.1574-6941.2007.00418.x

Küsel, K., Blöthe, M., Schulz, D., Reiche, M., Drake, H.: Microbial reduction of iron and porewater biogeochemistry in acidic peatlands. Biogeosciences, 5(6), 1537-1549 (2008).
doi:10.5194/bg-5-1537-2008

Liu, Y., Li, P., Zhao, K., Wang, B., Jiang, C., Drake, H., Liu, S.: Corynebacterium glutamicum contains 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases that display novel biochemical features. Applied and Environmental Microbiology, 74(17), 5497-5503 (2008).
doi:10.1128/AEM.00262-08

Whitehead, T., Price, N., Drake, H., Cotta, M.: Catabolic Pathway for the Production of Skatole and Indoleacetic Acid by the Acetogen Clostridium drakei, Clostridium scatologenes, and Swine Manure. Applied and Environmental Microbiology, 74(6), 1950-1953 (2008).
doi:10.1128/AEM.02458-07

Gößner, A., Picardal, F., Tanner, R., Drake, H.: Carbon metabolism of the moderately acid-tolerant acetogen Clostridium drakei isolated from peat. FEMS Microbiology Letters, 287(2), 236-242 (2008).
doi:10.1111/j.1574-6968.2008.01313.x

Hamberger, A., Horn, M., Dumont, M., Murrell, J., Drake, H.: Anaerobic Consumers of Monosaccharides in a Moderately Acidic Fen. Applied and Environmental Microbiology, 74(10), 3112-3120 (2008).
doi:10.1128/AEM.00193-08

2007

Liu, X., Wang, B., Jiang, C., Zhao, K., Drake, H., Liu, S.: Simultaneous biodegradation of nitrogen-containing aromatic compounds in a sequencing batch bioreactor. Journal of Environmental Sciences, 19(5), 530-535 (2007).
doi:10.1016/S1001-0742(07)60088-6

Schmalenberger, A., Drake, H., Küsel, K.: High unique diversity of sulfate-reducing prokaryotes characterized in a depth gradient in an acidic fen. Environmental Microbiology, 9(5), 1317-1328 (2007).
doi:10.1111/j.1462-2920.2007.01251.x

Fösel, B., Gößner, A., Drake, H., Schramm, A.: Geminicoccus roseus gen. nov., sp. nov., an aerobic phototrophic Alphaproteobacterium isolated from a marine aquaculture biofilter. Systematic and Applied Microbiology, 30(8), 581-586 (2007).
doi:10.1016/j.syapm.2007.05.005

Edwards, L., Küsel, K., Drake, H., Kostka, J.: Electron flow in acidic subsurface sediments co-contaminated with nitrate and uranium. Geochimica et Cosmochimica Acta, 71(3), 643-654 (2007).
doi:10.1016/j.gca.2006.09.017

Drake, H., Horn, M.: As the worm turns : the earthworm gut as a transient habitat for soil microbial biomes. Annual Review of Microbiology, 61(1), 169-189 (2007).
doi:10.1146/annurev.micro.61.080706.093139

Daniel, S., Pilsl, C., Drake, H.: Anaerobic oxalate consumption by microorganisms in forest soils. Research in Microbiology, 158(3), 303-309 (2007).
doi:10.1016/j.resmic.2006.12.010

2006

Gößner, A., Küsel, K., Schulz, D., Trenz, S., Lovell, C., Acker, G., Drake, H.: Trophic interaction of the aerotolerant anaerobe Clostridium intestinale and the acetogen Sporomusa rhizae sp. nov. isolated from roots of the black needlerush Juncus roemerianus. Microbiology, 152(4), 1209-1219 (2006).
doi:10.1099/mic.0.28725-0

Horn, M., Drake, H., Schramm, A.: Nitrous oxide reductase genes (nosZ) of denitrifying microbial populations in soil and the earthworm gut are phylogenetically similar. Applied and Environmental Microbiology, 72(2), 1019-1026 (2006).
doi:10.1128/AEM.72.2.1019-1026.2006

Horn, M., Mertel, R., Kästner, M., Gehre, M., Drake, H.: In vivo emission of dinitrogen by earthworms via denitrifying bacteria in the gut. Applied and Environmental Microbiology, 72(2), 1013-1018 (2006).
doi:10.1128/AEM.72.2.1013-1018.2006

Drake, H., Horn, M.: Earthworms as a transient heaven for terrestrial denitrifying microbes: a review. Engineering in Life Sciences, 6(3), 261-265 (2006).
doi:10.1002/elsc.200620126

Schnurr-Pütz, S., Bååth, E., Guggenberger, G., Drake, H., Küsel, K.: Compaction of forest soil by logging machinery favours occurence of prokaryotes. FEMS Microbiology Ecology, 58(3), 503-516 (2006).
doi:10.1111/j.1574-6941.2006.00175.x

2005

Horn, M., Ihssen, J., Matthies, C., Schramm, A., Acker, G., Drake, H.: Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov., and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa. International Journal of Systematic and Evolutionary Microbiology, 55(3), 1255-1265 (2005).
doi:10.1099/ijs.0.63484-0

2004

Drake, H., Daniel, S.: Physiology of the thermophilic acetogen Moorella thermoacetica. Research in Microbiology, 155(10), 869-883 (2004).
doi:10.1016/j.resmic.2004.10.002

Daniel, S., Pilsl, C., Drake, H.: Oxalate metabolism by the acetogenic bacterium Moorella thermoacetica. FEMS Microbiology Letters, 231(1), 39-43 (2004).
doi:10.1016/S0378-1097(03)00924-8

Loy, A., Küsel, K., Lehner, A., Drake, H., Wagner, M.: Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages. Applied and Environmental Microbiology, 70(12), 6998-7009 (2004).
doi:10.1128/AEM.70.12.6998-7009.2004

Matthies, C., Gößner, A., Acker, G., Schramm, A., Drake, H.: Lactovum miscens gen. nov., sp. nov., an aerotolerant, psychrotolerant, mixed-fermentative anaerobe from acidic forest soil. Research in Microbiology, 155(10), 847-854 (2004).
doi:10.1016/j.resmic.2004.06.006

2003

Seifritz, C., Drake, H., Daniel, S.: Nitrite as an energy-conserving electron sink for the acetogenic bacterium Moorella thermoacetica. Current Microbiology, 46(5), 329-333 (2003).
doi:10.1007/s00284-002-3830-6

Ihssen, J., Horn, M., Gößner, A., Matthies, C., Schramm, A., Drake, H.: N2O-producing microorganisms in the gut of the earthworm Aporrectodea caliginosa are indicative of ingested soil bacteria. Applied and Environmental Microbiology, 69(3), 1655-1661 (2003).
doi:10.1128/AEM.69.3.1655-1661.2003

Horn, M., Matthies, C., Küsel, K., Schramm, A., Drake, H.: Hydrogenotrophic methanogenesis by moderately acid-tolerant methanogens of a methane-emitting acidic peat. Applied and Environmental Microbiology, 69(1), 74-83 (2003).
doi:10.1128/AEM.69.1.74-83.2003

Horn, M., Schramm, A., Drake, H.: The earthworm gut : an ideal habitat for ingested N2O-producing microorganisms. Applied and Environmental Microbiology, 69(3), 1662-1669 (2003).
doi:10.1128/AEM.69.3.1662-1669.2003

Schramm, A., Davidson, S., Dodsworth, J., Drake, H., Stahl, D., Dubilier, N.: Acidovorax-like symbionts in the nephridia of earthworms. Environmental Microbiology, 5(9), 804-809 (2003).
doi:10.1046/j.1462-2920.2003.00474.x

2002

Karnholz, A., Küsel, K., Gößner, A., Schramm, A., Drake, H.: Tolerance and metabolic response of acetogenic bacteria toward oxygen. Applied and Environmental Microbiology, 68(2), 1005-1009 (2002).
doi:10.1128/AEM.68.2.1005-1009.2002

Küsel, K., Roth, U., Drake, H.: Microbial reduction of Fe(III) in the presence of oxygen under low pH conditions. Environmental Microbiology, 4(7), 414-421 (2002).
doi:10.1046/j.1462-2920.2002.00314.x

Küsel, K., Wagner, C., Trinkwalter, T., Gößner, A., Drake, H.: Microbial reduction of Fe(III) and turnover of acetate in Hawaiian soils. FEMS Microbiology Ecology, 40(1), 73-81 (2002).
doi:10.1111/j.1574-6941.2002.tb00938.x

Seifritz, C., Fröstl, J., Drake, H., Daniel, S.: Influence of nitrate on oxalate- and glyoxylate-dependent growth and acetogenesis by Moorella thermoacetica. Archives of Microbiology, 178(6), 457-464 (2002).
doi:10.1007/s00203-002-0475-6

Drake, H., Küsel, K., Matthies, C.: Ecological consequences of the phylogenetic and physiological diversities of acetogens. Antonie van Leeuwenhoek, 81(1-4), 203-213 (2002).
doi:10.1023/A:1020514617738

Reith, F., Drake, H., Küsel, K.: Anaerobic activities of bacteria and fungi in moderately acidic conifer and deciduous leaf litter. FEMS Microbiology Ecology, 41(1), 27-35 (2002).
doi:10.1111/j.1574-6941.2002.tb00963.x

2001

Küsel, K., Karnholz, A., Trinkwalter, T., Devereux, R., Acker, G., Drake, H.: Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots. Applied and Environmental Microbiology, 67(10), 4734-4741 (2001).
doi:10.1128/AEM.67.10.4734-4741.2001

Matthies, C., Kuhner, C., Acker, G., Drake, H.: Clostridium uliginosum sp. nov., a novel acid-tolerant, anaerobic bacterium with connecting filaments. International Journal of Systematic and Evolutionary Microbiology, 51(3), 1119-1125 (2001).
doi:10.1099/00207713-51-3-1119

2000

Kuhner, C., Matthies, C., Acker, G., Schmittroth, M., Gößner, A., Drake, H.: Clostridium akagii sp. nov. and Clostridium acidisoli sp. nov. : acid-tolerant, N2-fixing clostridia isolated from acidic forest soil and litter. International Journal of Systematic and Evolutionary Microbiology, 50(2), 873-881 (2000).
doi:10.1099/00207713-50-2-873

Küsel, K., Dorsch, T., Acker, G., Stackebrandt, E., Drake, H.: Clostridium scatologenes strain SL1 isolated as an acetogenic bacterium from acidic sediments. International Journal of Systematic and Evolutionary Microbiology, 50(2), 537-546 (2000).
doi:10.1099/00207713-50-2-537

1999

Gößner, A., Devereux, R., Ohnemüller, N., Acker, G., Stackebrandt, E., Drake, H.: Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica. Applied and Environmental Microbiology, 65(11), 5124-5133 (1999).

Küsel, K., Drake, H.: Microbial turnover of low molecular weight organic acids during leaf litter decomposition. Soil Biology & Biochemistry, 31(1), 107-118 (1999).
doi:10.1016/S0038-0717(98)00111-4

Seifritz, C., Fröstl, J., Drake, H., Daniel, S.: Glycolate as a metabolic substrate for the acetogen Moorella thermoacetica. FEMS Microbiology Letters, 170(2), 399-405 (1999).
doi:10.1111/j.1574-6968.1999.tb13400.x

Matthies, C., Grießhammer, A., Schmittroth, M., Drake, H.: Evidence for involvement of gut-associated denitrifying bacteria in emission of nitrous oxide (N2O) by earthworms obtained from garden and forest soils. Applied and Environmental Microbiology, 65(8), 3599-3604 (1999).

Küsel, K., Wagner, C., Drake, H.: Enumeration and metabolic product profiles of the anaerobic microflora in the mineral soil and litter of a beech forest. FEMS Microbiology Ecology, 29(1), 91-103 (1999).
doi:10.1111/j.1574-6941.1999.tb00601.x

Küsel, K., Pinkart, H., Drake, H., Devereux, R.: Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the seagrass Halodule wrightii. Applied and Environmental Microbiology, 65(11), 5117-5123 (1999).

1998

Frank, C., Schwarz, U., Matthies, C., Drake, H.: Metabolism of aromatic aldehydes as cosubstrates by the acetogen Clostridium formicoaceticum. Archives of Microbiology, 170(6), 427-434 (1998).
doi:10.1007/s002030050663

Limmer, C., Drake, H.: Effects of carbon, nitrogen, and electron acceptor availability on anaerobic N2-fixation in a beech forest soil. Soil Biology & Biochemistry, 30(2), 153-158 (1998).
doi:10.1016/S0038-0717(97)00099-0

1997

Kuhner, C., Grießhammer, A., Drake, H., Frank, C., Schmittroth, M., Acker, G., Gößner, A.: Sporomusa silvacetica sp. nov., an acetogenic bacterium isolated from aggregated forest soil. International Journal of Systematic Bacteriology, 47(2), 352-358 (1997).
doi:10.1099/00207713-47-2-352

Matthies, C., Erhard, H., Drake, H.: Effects of pH on the comparative culturability of fungi and bacteria from acidic and less acidic forest soils. Journal of Basic Microbiology, 37(5), 335-343 (1997).
doi:10.1002/jobm.3620370506

Karsten, G., Drake, H.: Denitrifying bacteria in the earthworm gastrointestinal tract and the in vivo emission of nitrous oxide (N(inf2)O) by earthworms. Applied and Environmental Microbiology, 63(5), 1878-1882 (1997).

Braus-Stromeyer, S., Schnappauf, G., Braus, G., Gößner, A., Drake, H.: Carbonic anhydrase in Acetobacterium woodii and other acetogenic bacteria. Journal of Bacteriology, 179(22), 7197-7200 (1997).

Drake, H., Daniel, S., Küsel, K., Matthies, C., Kuhner, C., Braus-Stromeyer, S.: Acetogenic bacteria : what are the in situ consequences of their diverse metabolic versatilities?. BioFactors, 6, 13-24 (1997).
doi:10.1002/biof.5520060103

1996

Limmer, C., Drake, H.: Non-symbiotic N2-fixation in acidic and pH-neutral forest soils : Aerobic and anaerobic differentials. Soil Biology & Biochemistry, 28(2), 177-183 (1996).
doi:10.1016/0038-0717(95)00118-2

Fröstl, J., Seifritz, C., Drake, H.: Effect of nitrate on the autotrophic metabolism of the acetogens Clostridium thermoautotrophicum and Clostridium thermoaceticum. Journal of Bacteriology, 178(15), 4597-4603 (1996).

Misoph, M., Drake, H.: Effect of CO2 on the fermentation capacities of the acetogen Peptostreptococcus productus U-1. Journal of Bacteriology, 178(11), 3140-3145 (1996).

Misoph, M., Daniel, S., Drake, H.: Bidirectional usage of ferulate by the acetogen Peptostreptococcus productus U-1 : CO2 and aromatic acrylate groups as competing electron acceptors. Microbiology, 142(8), 1983-1988 (1996).
doi:10.1099/13500872-142-8-1983

Parekh, M., Drake, H., Daniel, S.: Bidirectional transformation of aromatic aldehydes by Desulfovibrio desulfuricans under nitrate-dissimilating conditions. Letters in Applied Mircobiology, 22(2), 115-120 (1996).
doi:10.1111/j.1472-765X.1996.tb01122.x

Drake, H., Aumen, N., Kuhner, C., Wagner, C., Grießhammer, A., Schmittroth, M.: Anaerobic microflora of Everglades sediments : effects of nutrients on population profiles and activities. Applied and Environmental Microbiology, 62(2), 486-493 (1996).

Küsel, K., Drake, H.: Anaerobic capacities of leaf litter. Applied and Environmental Microbiology, 62(11), 4216-4219 (1996).

Wagner, C., Grießhammer, A., Drake, H.: Acetogenic capacities and the anearobic turnover of carbon in a Kansas prairie soil. Applied and Environmental Microbiology, 62(2), 494-500 (1996).

1995

Küsel, K., Drake, H.: Effects of environmental parameters on the formation and turnover of acetate by forest soils. Applied and Environmental Microbiology, 61(10), 3667-3675 (1995).

Karsten, G., Drake, H.: Comparative assessment of the aerobic and anaerobic microfloras of earthworm guts and forest soils. Applied and Environmental Microbiology, 61(3), 1039-1044 (1995).

1994

Gößner, A., Daniel, S., Drake, H.: Acetogenesis coupled to the oxidation of aromatic aldehyde groups. Archives of Microbiology, 161(2), 126-131 (1994).
doi:10.1007/BF00276472

Küsel, K., Drake, H.: Acetate synthesis in soil from a Bavarian beech forest. Applied and Environmental Microbiology, 60(4), 1370-1373 (1994).

1993

Daniel, S., Drake, H.: Oxalate- and glyoxylate-dependent growth and acetogenesis by Clostridium thermoaceticum. Applied and Environmental Microbiology, 59(9), 3062-3069 (1993).

Seifritz, C., Daniel, S., Gößner, A., Drake, H.: Nitrate as a preferred electron sink for the acetogen Clostridium thermoaceticum. Journal of Bacteriology, 175(24), 8008-8013 (1993).

Matthies, C., Freiberger, A., Drake, H.: Fumarate dissimilation and differential reductant flow by Clostridium formicoaceticum and Clostridium aceticum. Archives of Microbiology, 160(4), 273-278 (1993).
doi:10.1007/BF00292076

1992

Lux, M., Drake, H.: Re-examination of the metabolic potentials of the acetogens Clostridium aceticum and Clostridium formicoaceticum : chemolithoautotrophic and aromatic-dependent growth. FEMS Microbiology Letters, 95(1), 49-56 (1992).
doi:10.1111/j.1574-6968.1992.tb05341.x

Parekh, M., Keith, E., Daniel, S., Drake, H.: Comparative evaluation of the metabolic potentials of different strains of Peptostreptococcus productus : utilization and transformation of aromatic compounds. FEMS Microbiology Letters, 94(1-2), 69-74 (1992).
doi:10.1111/j.1574-6968.1992.tb05291.x

1991

Daniel, S., Keith, E., Yang, H., Lin, Y., Drake, H.: Utilization of methoxylated aromatic compounds by the acetogen Clostridium thermoaceticum : expression and specificity of the co-dependent O-demethylating activity. Biochemical and Biophysical Research Communications, 180(1), 416-422 (1991).
doi:10.1016/S0006-291X(05)81309-9

Books and Book sections

2014

Drake, H.: The genus Lactovum. In: Holzapfel, Wilhelm H. (Hrsg.): Lactic Acid Bacteria : Biodiversity and Taxonomy. - Chichester : Wiley, 2014. - 447-455.

2013

Drake, H., Küsel, K., Matthies, C.: Acetogenic prokaryotes. In: Rosenberg, Eugene (Hrsg.): The Prokaryotes: Prokaryotic physiology and biochemistry. - Berlin : Springer, 2013. - 3-60.

2011

Küsel, K., Drake, H.: Acetogens. In: Reitner, Joachim; Thiel, Volker (Hrsg.): Encyclopedia of Geobiology. - Dordrecht : Springer, 2011. - 1-5.

2009

Drake, H.: Thermicanus. In: de Vos, Paul ; Garrity, George M: Jones, Dorothy ; Frieg, Noel R. ; Ludwig, Wolfgang ; Rainey, Fred. A. ; Schleifer, Karl-Heinz ; Whitman, William B. (Hrsg.): Bergey's Manual of Systematic Bacteriology. Band 3. The Firmicutes. 2. Auflage. - New York : Springer, 2009. - 454-455.

Drake, H., Gößner, A.: Sporomusa. In: de Vos, Paul ; Garrity, George M: Jones, Dorothy ; Frieg, Noel R. ; Ludwig, Wolfgang ; Rainey, Fred. A. ; Schleifer, Karl-Heinz ; Whitman, William B. (Hrsg.): Bergey's Manual of Systematic Bacteriology. Band 3. The Firmicutes. 2. Auflage. - New York : Springer, 2009. - 1112-1116.

Drake, H.: Lactovum. In: de Vos, Paul ; Garrity, George M. ; Jones, Dorothy ; Frieg, Noel R. ; Ludwig, Wolfgang ; Rainey, Fred. A. ; Schleifer, Karl-Heinz ; Whitman, William B. (Hrsg.): Bergey's Manual of Systematic Bacteriology. Band 3. The Firmicutes. 2. Auflage. - New York : Springer, 2009. - 722-723.

2008

Microbes and the Environment : perspectives and Challenges. - Liu, S., Drake, H. (eds.). - Beijing : Science Press, 2008. - VIII, 160

Drake, H., Liu, S.: Current and future perspectives on the environmental importance of microorganisms. In: Liu, Shuang-Jiang ; Drake, Harold L. (Hrsg.): Microbes and the environment: perspectives and challenges. - Beijing : Science Press, 2008. - 3-11.

Drake, H., Gößner, A.: Acetogens: anaerobic gamblers at the oxic-anoxic interface. In: Liu, Shuang-Jiang ; Drake, Harold L. (Hrsg.): Microbes and the environment: perspectives and challenges. - Beijing : Science Press, 2008. - 59-66.

2007

Bothe, H., Drake, H.: Interactions among organisms that result in enhanced activities N-cycle reactions. In: Bothe, Hermann ; Ferguson, Stuart J. ; Newton, William E. (Hrsg.): Biology of the Nitrogen Cycle. - Amsterdam : Elsevier, 2007. - 397-405.

2006

Ogram, A., Bridgham, S., Corstanje, R., Drake, H., Küsel, K., Mills, A., Newman, S., Portier, K., Wetzel, R.: Linkages between microbial community composition and biogeochemical processes across scales. In: Verhoeven, Jos T. A. ; Beltman, Boudewijn ; Bobbink, Roland ; Wigham, Dennis F. (Hrsg.): Wetlands and Natural Resource Management. - Berlin : Springer, 2006. - 239-268.
doi:10.1007/978-3-540-33187-2_11

Bodelier, P., Frenzel, P., Drake, H., Küsel, K., Hurek, T., Reinhold-Hurek, B., Lovell, C., Megonigal, P., Sorrell, B.: Ecological aspects of microbes and microbial communities inhabiting the rhizosphere of wetland plants. In: Verhoeven, Jos T. A. ; Beltman, Boudewijn ; Bobbink, Roland ; Wigham, Dennis F. (Hrsg.): Wetlands and Natural Resource Management. - Berlin : Springer, 2006. - 205-238.
doi:10.1007/978-3-540-33187-2_10

Drake, H., Schramm, A., Horn, M.: Earthworm gut microbial biomes: their importance to soil microorganisms, denitrification, and the terrestrial production of the greenhouse gas N2O. In: König, Helmut ; Varma, Ajit (Hrsg.): Intestinal Microorganisms of Termites and other Invertebrates. - Berlin : Springer, 2006. - 65-87.

Drake, H., Küsel, K., Matthies, C.: Acetogenic prokaryote. In: Dworkin, Martin (Hrsg.): The Prokaryotes. Band 2. Ecophysiology and Biochemistry. 3. Auflage. - New York : Springer, 2006. - 354-420.

2005

Drake, H., Küsel, K.: Acetogenic clostridia. In: Dürre, Peter (Hrsg.): Handbook on clostridia. - Boca Raton, Fla : Taylor & Francis, 2005. - 719-746.

2004

Müller, V., Imkamp, F., Rauwolf, A., Küsel, K., Drake, H.: Molecular and cellular biology of acetogenic bacteria. In: Nakano, Michiko M. ; Zuber, Peter (Hrsg.): Strict and facultative anaerobes : medical and environmental aspects. - Wymondham : Horizon Bioscience, 2004. - 251-281.

2003

Drake, H., Küsel, K.: How the diverse physiologic potentials of acetogens determine their in situ realities. In: Ljungdahl, Lars G.(Hrsg.): Biochemistry and physiology of anaerobic bacteria. - New York : springer, 2003. - 171-190.

1996

Drake, H.: Regulation of the C1 metabolism of acetogens : metabolic by-passes and ecological implications. In: Lidstrom, Mary E. ; Tabita, F. Robert (Hrsg.): Microbial growth on C1 compounds : Proceedings of the 8th International Symposium on Microbial Growth on C1 Compounds, held in San Diego, U.S.A., 27 August - 1 September 1995. - Dordrecht : Kluwer, 1996. - 72-79.

1995

Drake, H.: Regulation of the CO2-fixation potentials and substrate/product diversity of acetogenic bacteria. In: Nicholas, Kenneth ; Ljungdahl, Lars G. (Hrsg.): Third International Conference on Carbon Dioxide Utilization : ICCDU III : abstracts. - Norman, USA : University of Oklahoma, Oklahoma Center for Continuing Education, 1995. - 61-63.

1994

Akagi, J., Drake, H., Kim, J., Gevertz, D.: Thiosulfate and trithionate reductases. In: Peck, Harry D. (Hrsg.): Inorganic microbial sulfur metabolism. - San Diego : Academic Press, 1994. - 260-270.
doi:10.1016/0076-6879(94)43019-5

Drake, H.: Acetogenesis, acetogenic bacteria, and the acetyl-CoA "Wood/Ljungdahl" pathway : past and current perspectives. In: Harold L. Drake (eds.): Acetogenesis. - New York : Chapman & Hall, 1994. - 3-60.
doi:10.1007/978-1-4615-1777-1_1

Drake, H.: Acetogenesis and acetogenic bacteria. In: Joshua Lederberg (eds.): Encyclopedia of microbiology. Band 1. - San Diego : Academic Press, 1994. - 1-15.

Drake, H., Daniel, S., Matthies, C., Küsel, K.: Acetogenesis : Reality in the laboratory, uncertainty elsewhere. In: Harold L. Drake (eds.): Acetogenesis. - New York : Chapman & Hall, 1994. - 273-302.
doi:10.1007/978-1-4615-1777-1_10

1993

Drake, H.: CO2, reductant, and the autotrophic acetyl-CoA pathway : alternative origins and destinations. In: Murrell, J. Colin ; Kelly, D. P. (Hrsg.): Microbial growth on C1 compounds. - Andover : Intercept, 1993. - 493-507.

Other publications

2006

Küsel, K., Trinkwalter, T., Drake, H., Devereux, R.: Comparative evaluation of anaerobic bacterial communities associated with roots of submerged macrophytes growing in marine or brackish water sediments. Journal of Experimental Marine Biology and Ecology, 337(1), 49-58 (2006).
doi:10.1016/j.jembe.2006.06.004

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